PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G039400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 317aa    MW: 34881.4 Da    PI: 10.0444
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G039400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-1590135247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++WT+eE++ ++ + ++lG+g+W+ I++++ ++Rt+ q+ s+ qky
  Manes.14G039400.1.p  90 KPWTEEEHQSFLAGLTKLGKGDWRGISKEFVTTRTPTQVASHAQKY 135
                          58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.927722IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.63484140IPR017930Myb domain
SuperFamilySSF466891.51E-1685139IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-1787139IPR006447Myb domain, plants
SMARTSM007171.5E-1088138IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-1188135IPR009057Homeodomain-like
PfamPF002497.0E-1290135IPR001005SANT/Myb domain
CDDcd001676.39E-991136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVKEAARKCS HCGQNGHNSR TCNWKGGVKL FGVHISEKNE EPMKKSVSLG NLQYLQDKSV  60
HNHVEDYGYV SDGFISSKRG KAAQERKKGK PWTEEEHQSF LAGLTKLGKG DWRGISKEFV  120
TTRTPTQVAS HAQKYFLRKA STDKKKRRSR LFDMALKESV LASQELPNLL SSSSTQVSPQ  180
ALEPAGTSSA SPMKNSDIPS HEGYPGNVQS LMSTRTMQFT AASYVQMMNY NNKRLAYPYL  240
SKTRSPGSFA NCAPPTTHPS GIPMPRSFEL SFTQEGPSTE HVDSQELDLK IGPPPQPPQG  300
ARISPNPLET NPLSVI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143147KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G039400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592847.10.0probable transcription factor At5g61620
TrEMBLA0A2C9UJK80.0A0A2C9UJK8_MANES; Uncharacterized protein
STRINGcassava4.1_012140m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-68MYB_related family protein