PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.14G029300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14318.4 Da PI: 8.6915 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.2 | 5e-42 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+C++dC+++pyfp+++p++fa+vhk++Gasnv k+l++lp+++r +a++sl+yeA++r++dPvyG+vg+i+ l+qq++ + Manes.14G029300.1.p 5 RCAACKYLRRRCPSDCIFSPYFPSNDPQRFACVHKIYGASNVGKMLQQLPTHQRVQAANSLFYEAQCRIQDPVYGCVGIISLLHQQIHIA 94 6***************************************************************************************** PP DUF260 91 kaelallkee 100 +++la++++e Manes.14G029300.1.p 95 QNQLAKTQAE 104 ******9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.038 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-41 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 129 aa Download sequence Send to blast |
MNSDRCAACK YLRRRCPSDC IFSPYFPSND PQRFACVHKI YGASNVGKML QQLPTHQRVQ 60 AANSLFYEAQ CRIQDPVYGC VGIISLLHQQ IHIAQNQLAK TQAEIAVLST SHAPDSQFQP 120 NLAATRPL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-40 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-40 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00381 | DAP | Transfer from AT3G26620 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.14G029300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021592041.1 | 3e-91 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 6e-57 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
TrEMBL | A0A2C9UJB0 | 6e-90 | A0A2C9UJB0_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026224m | 1e-90 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G26620.1 | 3e-59 | LOB domain-containing protein 23 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.14G029300.1.p |