PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G011000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 368aa    MW: 41345 Da    PI: 6.3813
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G011000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-151663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++ Ed++lv  ++ +G ++W++ ++  g+ R++k+c++rw +yl
  Manes.14G011000.1.p 16 KGPWSPAEDLRLVTFIHNHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                         79******************************99************97 PP
2Myb_DNA-binding521.6e-1669114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l
  Manes.14G011000.1.p  69 RGNFTKEEEDTIITLHQTLGNK-WSRIASHLP-GRTDNEIKNVWNTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-22766IPR009057Homeodomain-like
PROSITE profilePS5129412.9811163IPR017930Myb domain
SuperFamilySSF466892.04E-2814110IPR009057Homeodomain-like
SMARTSM007172.0E-111565IPR001005SANT/Myb domain
PfamPF002493.1E-141663IPR001005SANT/Myb domain
CDDcd001673.43E-81863No hitNo description
PROSITE profilePS5129425.10764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2767118IPR009057Homeodomain-like
SMARTSM007173.4E-1568116IPR001005SANT/Myb domain
PfamPF002491.8E-1569114IPR001005SANT/Myb domain
CDDcd001673.09E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKGRAPCCD KTQVKKGPWS PAEDLRLVTF IHNHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTKEEEDTI ITLHQTLGNK WSRIASHLPG RTDNEIKNVW NTHLKKKLAF  120
NKDHADSNRE KSKASPSSSS QSSSSSSSTI ISGGKRNMAI IELDHQPKHG SVSKRPRPLE  180
DLREFKPSNK EAKEVSSPSS SSHNSNVTNY SSQVDVSKAD DEQMGSLFNF SSGPYDVPLE  240
EVNKPEIQDI NAAVEIPLES DLDFWNMLDG LNTMQTNEEV QLPNVVISQS SSLGVEYDIN  300
GEVETRKWLQ YLENELGLET TQDENQKNLS EDAAKPFLAP ENYQCDEIPM KSKVNSEMGH  360
YHSWPSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-25161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-25161184105C-Myb DNA-Binding Domain
1msf_C9e-25161184105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173177KRPRP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G011000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346712e-47KM034671.1 Jatropha curcas clone JcMYB051 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634436.10.0transcription factor MYB63
TrEMBLA0A2C9UIU60.0A0A2C9UIU6_MANES; Uncharacterized protein
STRINGcassava4.1_028289m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.11e-74myb domain protein 58