PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G009500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 267aa    MW: 29888.8 Da    PI: 5.8797
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G009500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.14.1e-56841881102
                NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 
                          ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd
  Manes.14G009500.1.p  84 QLQMFWANQmeeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTD 173
                          89******9777789*************************************************************************** PP

                NF-YC  88 ifdflvdivprdelk 102
                          +fdflvdi+prdelk
  Manes.14G009500.1.p 174 VFDFLVDIIPRDELK 188
                          ************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.53E-3467178IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.9E-3798170IPR009072Histone-fold
PfamPF008082.3E-21106169IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDQSEQTQQQ RSQQQQQPVM GVVAGAVQMS YTSTPYQTAG MMASGTPATA VPSPTQPPST  60
FSNSTHQLTY QQSQHFHHQQ QQQQLQMFWA NQMEEIEQTT DFKNHSLPLA RIKKIMKADE  120
DVRMISAEAP VIFAKACEMF ILELTLRSWI HTEENKRRTL QKNDIAAAIS RTDVFDFLVD  180
IIPRDELKEE GLGVTKATIP MVGSPADIPY YYVPPQHPVG PPGMIMGKPI DQAAVYGSQQ  240
PRQPVAFKPW PQTQPPLEAQ QQPSDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5892184395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G009500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592144.10.0nuclear transcription factor Y subunit C-2-like
TrEMBLA0A2C9UIQ90.0A0A2C9UIQ9_MANES; Uncharacterized protein
STRINGcassava4.1_014024m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-82nuclear factor Y, subunit C2