PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.14G002400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 331aa MW: 36042.4 Da PI: 5.1897 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl Manes.14G002400.1.p 16 KGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.1e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia+ ++ gRt++++k++w++ Manes.14G002400.1.p 69 RGAFSPQEEELIIHLHSLLGNR-WSQIAAGLP-GRTDNEIKNFWNS 112 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-23 | 10 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.294 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.23E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-9 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-8 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.219 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 67 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-11 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MRKPEVCGKN NNKLRKGLWS PEEDDKLMNY MLNNGQGCWS DVARNAGLQR CGKSCRLRWI 60 NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAAGLPG RTDNEIKNFW NSTIKKRLKN 120 LTSSAASPNT SDSYSEPSKE VAAAAAAAIV GGGFISMQEQ AMMNPMCTDP SLSSASSSNT 180 SMQAMFLNQM DSSPTLDHGL SMYGANAYFN NNAPPCMTPI GITSGDDLHG NQGILGGVNI 240 GIGGELHIPP LESIIIEENA RTEDIATHGN TTNNYPFSNV NKMNSNCNKA ENMAAGIGNL 300 WQGEDLKVGD WDLEELMKDV SSFPFLDFSN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-27 | 11 | 118 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.14G002400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF148677 | 1e-110 | KF148677.1 Populus trichocarpa MYB transcription factor (MYB2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593036.1 | 0.0 | transcription factor MYB46-like | ||||
TrEMBL | A0A2C9UII3 | 0.0 | A0A2C9UII3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_021058m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF774 | 34 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 2e-64 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Manes.14G002400.1.p |