PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G001700.4.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 453aa    MW: 51171 Da    PI: 6.0812
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G001700.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.65.8e-22123217185
             trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                          +Wt++ v++Li+++  ++++ +            +kk++W+ vsk m+++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ +
  Manes.14G001700.4.p 123 KWTDNVVRLLIAVVACVGDDNEGVDglkrksgilQKKGKWKTVSKIMMSKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPA 212
                          7*************95555544322223445777**********************************************6699999998 PP

             trihelix  81 yfdql 85 
                          + d++
  Manes.14G001700.4.p 213 LMDSM 217
                          88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-19121244No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDNSGLGGRF LSGPTGGLLD LESPIHRQQQ TQLGHPPLTH QNHMNLIGGL DNDHQTMGLT  60
EVKGSIPKGY SANFSKGKAV SPLNAANNGN ASEDDEPSFT EDWNGENSSG AKGKKGSQWQ  120
RMKWTDNVVR LLIAVVACVG DDNEGVDGLK RKSGILQKKG KWKTVSKIMM SKGCHVSPQQ  180
CEDKFNDLNK RYKRLNDILG RGTSCRVVEN PALMDSMPHL SAKAKDDVRK ILSSKHLFYK  240
EMCAYHNGQR IPNCQDLDLQ GCSLPRERCS KDNDGSEEEE AEGHDDSDDD EWDGEDDSNA  300
KVDGERMGKY ERDNVSEEDA HLWTQSGGCT GFEVEMAGIF QDPTVSVWEK KEWIKKQKLQ  360
VLEQRVSIQA QAFELEKQHF KWLRYCSKKD REFERLRLEN ERIKLENEQS ILQLRQKQLE  420
MDFRSSKTSQ DPTSFGVDRI QARDQIDLGR HQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G001700.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021592582.10.0uncharacterized protein LOC110600136
RefseqXP_021592583.10.0uncharacterized protein LOC110600136
RefseqXP_021592584.10.0uncharacterized protein LOC110600136
TrEMBLA0A251J8090.0A0A251J809_MANES; Uncharacterized protein
STRINGcassava4.1_007480m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-70sequence-specific DNA binding transcription factors