PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G001400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 328aa    MW: 36952.4 Da    PI: 8.2127
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G001400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05164183120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+F+r  n++ H+
  Manes.14G001400.1.p 164 FSCPLCFKTFNRYNNMQMHM 183
                          89*****************9 PP
2zf-C2H214.79.2e-05248270123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk F  + + ++H +++
  Manes.14G001400.1.p 248 FMCRKCGKAFAVRGDWRTHEKNC 270
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66164191IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-5164183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576671.18E-6229268No hitNo description
Gene3DG3DSA:3.30.160.608.9E-6244268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549248268IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808248268IPR007087Zinc finger, C2H2
SMARTSM00355140274297IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MIDPKSNYFS GCYNLNHLPR LSSSASSSNP SLYASYGYNS FTHHCQYSSS PPSPPVKAAL  60
PLLSLSPTRH DYHQQESWCS ATEVGKNKDK EESLFDNDSV TVALHLGLPS PSSADFVSSL  120
SSTEISSDKE DVTVASGYQT TNTLVKRQYW IPTPAQILIG PTQFSCPLCF KTFNRYNNMQ  180
MHMWGHGSQY RKGPESLRGT QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK  240
RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGHGHA  300
AYGIDSFEEE EEEEPASEIE QENESTR*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G001400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634811.10.0zinc finger protein WIP2-like
SwissprotQ8W0311e-130ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A2C9UII60.0A0A2C9UII6_MANES; Uncharacterized protein
STRINGcassava4.1_027373m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-123C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]