PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G154100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | ZF-HD | ||||||||
Protein Properties | Length: 279aa MW: 30805.6 Da PI: 8.9484 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98 | 7.3e-31 | 62 | 118 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 + vrYkeClkN Aa++Gg+a+DGCgEfmps ge+gt +alkC+AC CHRnFHR+e + Manes.13G154100.1.p 62 KVVRYKECLKNYAAAIGGNATDGCGEFMPS-GEQGTLEALKCSACSCHRNFHRKEIDG 118 679**************************9.999********************9876 PP | |||||||
2 | Homeobox | 14.2 | 7.6e-05 | 204 | 259 | 1 | 52 |
TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 +r Rt+ft+eq + + ++ e k +++ +++ ++ + +g++ r+ kvW +N + Manes.13G154100.1.p 204 KRFRTKFTEEQKQKMLSFAEkagwKMQKLEESAVQRFCQDIGIKRRVLKVWMHNNK 259 789***********987655777789****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 9.5E-29 | 64 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-23 | 64 | 119 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-29 | 65 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.1 | 66 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.0E-19 | 197 | 264 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.4E-30 | 198 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.4E-27 | 203 | 259 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MEGQKERNNS SPPKEDMSIT RNGGCTAENG RIITSAASRL PFNGPTGAPS SLHLEDQRPC 60 KKVVRYKECL KNYAAAIGGN ATDGCGEFMP SGEQGTLEAL KCSACSCHRN FHRKEIDGEC 120 VYDFYHSSIV GNSGSRIILG HHNGVNGSPQ VHHINPLLSS KAPPPHQVIV SYRSGSVPSE 180 SDEKDDDDDG HGVVAIRSVG KPRKRFRTKF TEEQKQKMLS FAEKAGWKMQ KLEESAVQRF 240 CQDIGIKRRV LKVWMHNNKH NFAKKNPSTS YLEAEQSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-21 | 204 | 261 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G154100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633473.1 | 0.0 | uncharacterized protein LOC110630336 | ||||
Swissprot | Q9M9S0 | 2e-64 | ZHD4_ARATH; Zinc-finger homeodomain protein 4 | ||||
TrEMBL | A0A2C9US69 | 0.0 | A0A2C9US69_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023329m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 8e-63 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G154100.1.p |