PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G143700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C3H
Protein Properties Length: 403aa    MW: 45251.6 Da    PI: 8.0029
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G143700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09140162326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           e C+ f+r G C++Gd C FaHg
  Manes.13G143700.1.p 140 GEVCPEFRR-GACNRGDACEFAHG 162
                          689******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.32E-5136166IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6137163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-6137164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366138164IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7141162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4169200IPR000571Zinc finger, CCCH-type
SMARTSM003561.6172195IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484172196IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSTICADQHK LYHSHQLFSS SSSKKTFKDL DIPPRKQHLT KKSLQESPDT MSTNCSNLQK  60
FLPFNDAING DHDHDYAHAH AYGKVADGDL DPYSSDHFRM FEFKVRRCTR SRSHDWTDCP  120
FAHPGEKARR RDPRKYHYSG EVCPEFRRGA CNRGDACEFA HGVFECWLHP SRYRTEACKD  180
GKNCKRKVCF FAHSPRQLRI LPEVSCHAVK YDKSLILPCS SVNHGHCCCF ACHSVISSPT  240
STLLGMSHMS PPLSPSLSPP LSPVKQQSIS GLSPISRYND RLSKLRSGFM SYKDVLTELM  300
EAMNFNDEAP ASSPISFSAA NNRKTNSTPW MDSSSSFNGE DYHHQQQLIL SPSTPNPRGS  360
RNFLSGDCSS KGFNIDEQMN NNDDNKNGGG DPDLGWVNEL LM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G143700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632554.10.0zinc finger CCCH domain-containing protein 2
TrEMBLA0A2C9US040.0A0A2C9US04_MANES; Uncharacterized protein
STRINGcassava4.1_008973m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-78C3H family protein