PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G141800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 1777aa    MW: 199763 Da    PI: 5.0635
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G141800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.7e-183187157
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                         ++kR   t++qle+Le+ ++ + yps++ r+eL+++lgL++rq ++WF+ rR k++k
  Manes.13G141800.1.p 31 KSKRKMKTASQLEILERTYAVETYPSESLRAELSAQLGLSDRQLQMWFCHRRLKDRK 87
                         679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-171687IPR009057Homeodomain-like
SuperFamilySSF466892.52E-152587IPR009057Homeodomain-like
PROSITE profilePS5007116.4872888IPR001356Homeobox domain
SMARTSM003895.0E-153092IPR001356Homeobox domain
CDDcd000862.34E-133187No hitNo description
PfamPF000465.7E-163187IPR001356Homeobox domain
PROSITE profilePS5082717.171564623IPR018501DDT domain
SMARTSM005711.1E-23564623IPR018501DDT domain
PfamPF027914.5E-18565620IPR018501DDT domain
PfamPF050661.1E-15746813IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.3E-79631000IPR028942WHIM1 domain
PfamPF156137.1E-1311401212IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1777 aa     Download sequence    Send to blast
MDGNGSAAAG DGGSGGSVEG EKKKPPEGEV KSKRKMKTAS QLEILERTYA VETYPSESLR  60
AELSAQLGLS DRQLQMWFCH RRLKDRKAPS VKRQNKDSPA PSATPAGEEM GPVTEVGNEL  120
VSVSASGSSP FGHGMDPRRL VARTPGVAVP RIGADMSAMK RYYEPQQSIT ELRAIAFVEA  180
QLGEPLREDG PILGMEFDPL PPDAFGAPLA SAGQQKQPGR PFEATVYERP DLKPVKGATR  240
PVHEYQFLPQ QPTVRGEAYE RVAPSYQYGS PLDGHNSKTA ASSTVRPFVH ANEQVPSSYG  300
FPSQLPSLNL MPQEGRQNHL LPSATAEYDN MLRKTSLTNI GVDSQFGALP ITALDNPFVP  360
SDRRVTHDED ILRIERKRKS EEARIAREVE AHEKRIRKEL EKQDLLRRKR EEQIRKEMER  420
HDRERRKEEE RILREKQREE ERYQREQRRE LERRERFLQK ESIRAEKMRQ KEELRREKEA  480
ARQKAATERA IARRIAKESM ELIEDERLEL MELAASTKGL PSILSLSFET LQNLDSFRDK  540
LVRFPPKSVL LKRPFAVQPW SDSEENVGNL LMVWRFLITF ADVLGIWPFT LDEFVQAFHD  600
YDPRLLGEIH FALLRTIIKD IEDVARTPAT GLGANQNSAA NPGGGHPQIV EGAYAWGFDI  660
RIWQRHLSPL TWPEILRQFA LSAGFGPQLK KRNVEQAYIR DDNEGNDGED VITNLRNGAA  720
VENAVAIMQE RGFSNHRRSR HCLTPGTVKF AAFHVLSLEG SKGLTILEVA EKIQRSGLRD  780
LTTSKTPEAS IAAALSRDSK LFERTAPSTY CVRPAYRKDP VDAEAILSAA RERIRIFKSG  840
FVDGEDADEA ERDEDSESDV ADDPEVDDFG TDLNPKKEDH NSPEANKFNA KTQFENGKEG  900
SDVMRTPKVG LQNLGEGFSS MHSKGTHEAK NVGSSIDQSG DFLGVPTNTE QEDADIDESN  960
LGEPWVQGLM EGEYSDLSVE ERLNALVSLI GVAIEGNSIR LVLEERLEAA NALKKQMWAE  1020
AQLDKRRMKE EYVTRMHYPS FTGNKVETNL TTSTAEVRQS PLVTVDMPMN ASAQQEQSDD  1080
PQNDMTYPNN MPSEGNMHMQ DLSAGPDNLA YQQPGLAADK SRSQLKSFIG HKAEEMYVYR  1140
SLPLGQDRRR NRYWQFVASA SCNDPGCGRI FVELHDGRWR LIDTEQALDS LFASLDVRGV  1200
RESYLHMMLQ KIEMPFKEAV RRNMQCAGIE RQSGESVKAE AVEVVTGLEC STGIDSPNST  1260
ICVVDSDMSE STSFSIELGR NETERNNALR RYQDFGKWIW KECFNSSTLC AMKHGKKRCR  1320
QLLAVCDYCH DIYLSEDDCC PSCNNTYQHS GSDFNFSKHS TREEKLKIGL DYNFNGSSSP  1380
LRIRLLKLQL ALIEVSLTPE ALQPFWTNGY RKSWGTKLQS SSSAEDLLEV LTLLEGSIKR  1440
DYLSSSFETT SELLGSDNPS GLAANDYYGM EKVTVLPWLP RTTAAAALRI MEFDSSISYT  1500
LHQKVESQKD RGNGDFIKLP SKFAIAKNTQ DNEAAETPPH QAGLLQEESW VDIAGLGRGR  1560
GIRGRGRGRT RGGRSQRKVT GSRSESSKRR MSTNNDRLGQ VLSWKTQSRG RRGRKRGRRS  1620
IRSRQKQVKR PVEPQIPKET IYEKTPRRLE RDDWNGDEAR FQLQNAENLS SSSEKSEYDD  1680
DNGQATGDEY DDLAVDDYGG GFNGKSNELL EGSDYNIDVN EDDDDEEDEL DEDEDEQGDM  1740
EVEGYINGDS DEDEMREQNG DPDEEGIGST SSDFSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116101618RRGRKRGRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G141800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632678.10.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2C9URI80.0A0A2C9URI8_MANES; Uncharacterized protein
STRINGcassava4.1_033420m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator