PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G141500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 484aa    MW: 52977.3 Da    PI: 8.4898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G141500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-056181323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C++Cgk F r  nL+ H r H
  Manes.13G141500.1.p 61 CEICGKGFQRDQNLQLHRRGH 81
                         *******************88 PP
2zf-C2H212.80.00035135157123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H +t+
  Manes.13G141500.1.p 135 WKCDKCSKRYAVQSDWKAHSKTC 157
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-65881No hitNo description
Gene3DG3DSA:3.30.160.604.2E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4895981IPR007087Zinc finger, C2H2
SMARTSM003550.0765981IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4123156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.33E-6130155No hitNo description
SMARTSM00355140135155IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MLENMDEEAI SSNGSFVQNP VAGSNLPSVK RKRNLPGNPD PEAEVIALSP KTLMATNRFL  60
CEICGKGFQR DQNLQLHRRG HNLPWKLKQR TSKEVRKRVY VCPEKTCVHH HPSRALGDLT  120
GIKKHFCRKH GEKKWKCDKC SKRYAVQSDW KAHSKTCGTR EYKCDCGTLF SRRDSFITHR  180
AFCDALAEET ARLNAEANIN GLAAVSANFN YHHLMGTSPV APNMAQHFPS IFKPISSNDQ  240
AMDQTPRGLS LWVSQEPQVH HEAIGSNNGM QEIHQLGSMV SSGTIFCEPL VSSSNPSPSD  300
HYQLNWPFLG NKFSSSNAHE ELTSTNSLPL NNVKDAAAAA QLVSVPSLYS TQQQSHQTSS  360
AANMSATALL QKAAQIGATS TDPSFLGSFG LKCNSNSIQE AGNKYCGLYG SNSINTSTNL  420
ASDVENSAGN DISSLNHQLQ MYPTAKRQKI QSDQENTGGQ TRDFLGVGVQ QAICHPSTMN  480
GWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36131200372Zinc finger protein JACKDAW
5b3h_F1e-36131200372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G141500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632251.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-159IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2C9UTQ80.0A0A2C9UTQ8_MANES; Uncharacterized protein
STRINGcassava4.1_032898m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46262951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-159C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]