PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G138300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 344aa MW: 37809.5 Da PI: 6.3438 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.8 | 5.5e-36 | 20 | 118 | 2 | 90 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec..ea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ + + +a Manes.13G138300.1.p 20 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwhptandangmmE------TdhNA 103 79**************************************************************876663332222221......12222 PP TCP 76 esssssasnsssgka 90 +ss+ + +++s+++ Manes.13G138300.1.p 104 GSSEMAIAEQSESSG 118 222222222222211 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-32 | 20 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.979 | 22 | 80 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MKGAGGEIVQ VQGGHIVRST GRKDRHSKVY TSKGPRDRRV RLSAHTAIQF YDVQDRLGYD 60 RPSKAVDWLI KKAKSAIDKL AELPPWHPTA NDANGMMETD HNAGSSEMAI AEQSESSGYS 120 FQLHRQLADN PSNDSSFITP PIDPDTMKSL FPTSSTTSTM NFQGYPPEII SRTTNHSEDL 180 GLSLHPFQDQ DLIHGQSQAD TSHTPSNDQN LFGGSAPVGY EANFQRMMAW SNNTGTENRT 240 DGGFGFNPPQ MPPQQTLLEQ ESAFSQRGPL QSSFAQTIRA WNDLTMASAN HHRAQEIHQS 300 FIFGSRFASE GLPGFSIPVR IHGEEEQTVV SDRPSSSSPN SQH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-22 | 27 | 80 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G138300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631691.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_021631692.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_021631693.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 3e-74 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2C9UT11 | 0.0 | A0A2C9UT11_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011082m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 2e-75 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G138300.1.p |