PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G134500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TALE | ||||||||
Protein Properties | Length: 820aa MW: 88412.2 Da PI: 7.2261 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 2.9e-09 | 579 | 616 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Manes.13G134500.3.p 579 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 616 664459******************************88 PP | |||||||
2 | BELL | 123.1 | 1.1e-39 | 439 | 510 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ Manes.13G134500.3.p 439 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 510 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-82 | 361 | 508 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-52 | 366 | 507 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.519 | 557 | 620 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.75E-13 | 560 | 621 | No hit | No description |
SMART | SM00389 | 1.2E-9 | 560 | 624 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-17 | 561 | 627 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 563 | 626 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.2E-18 | 577 | 616 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 820 aa Download sequence Send to blast |
MGIATPPLPP ILKTHQSSVA PLIPSKSNSM SQDYHQAGIF SFSNGFERSQ VTHHQEHHQQ 60 QQHHLAQQIR RDKLRVQAGY GPPSEPLVGI EDEESGGLPV YETAGMLSEM FNFPPGGPVT 120 AAELLDQPLQ SNYRTAHPRQ QQPVTTNEWY SNNRQGMVGV LGPLGDSKNH NSRESLAQHH 180 QISGINADSA AAMQLFLMNP QPRSPSPAPS HPHHPPATSS TLHMLLPNPS TSLQGFSVSG 240 HGGAFGASSE ISPPQFTWVP GSANEGANTG AQLNNPVEIG SVVEGQGLSL SLSSSLQHLE 300 AAKAEELRMG ESGLLYYNQG GGSSSAAAQY YKNLGGQHQA LHLQAGVGQN HQVHVGFGSS 360 LGMVNVLRNS KYVKAAQELL EEFCSVGRGQ FKKNKYTRQN TNPSSNNPGG SSGGGSGGGG 420 GGGGSSSSTK DFPPLSASDR IEHQRRKVKL LSMLDEVDRR YNHYCEQMQM VVNSFDLVMG 480 FGAAVPYTAL AQKAMSRHFR CLKDAIAAQL KQSCELLGEK DGAGTSGITK GETPRLKLLE 540 QSLRQQRAFH QMGMMEQDAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA DKHLLARQTG 600 LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEDEDGGVDE DRERKQNNNS NNKSGVALAQ 660 TPTPTESSSA PSTTTTLPPA PVPAPAGKRS EITNENDPSI LAINRQCFSE NQAKHSPSTT 720 ATTIITPTTD QVAPPPSHAQ PFHDLTDETC RRGSNMVAAA EYGTTSVQHA NAGPDIGPTL 780 IRFGTTATAG DVSLTLGLRH AGNMPEKGSA FSFRDFGNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 566 | 624 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 566 | 624 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 2e-16 | 566 | 623 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 566 | 623 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 411 | 424 | SGGGSGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G134500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021632595.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_021632596.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-168 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | A0A251JJM3 | 0.0 | A0A251JJM3_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_001790m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-163 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G134500.3.p |
Publications ? help Back to Top | |||
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