PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G130900.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Protein Properties

Length: 315aa MW: 35628.1 Da PI: 8.9665

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G130900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.6e-17	5	80	18	99
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pkkf+++hg++ ++ ++l+ +g W+++l +k+ g+++l+kGW+eF+k + L+ g f+vFk++g+ f +v +++k Manes.13G130900.2.p 5 IPKKFIRKHGKDLPS--PVILKVANGSIWKIEL--SKCHGEVWLEKGWQEFAKHHSLDHGYFLVFKYEGHGHF--CVFILDK 80 9******988555..59999*******..******************************997777..7777665 PP
2	B3	40.1	6.5e-13	219	309	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffk + d k++++++p +f +++ ++ + tl++ r W vkl ++s++ + + +GW+ F+++n L+ gD+++F+l++ + Manes.13G130900.2.p 219 FFKSVVWLDKRKNSIVCVPVSFSRRNIKDCVANLTLQF---GDRLWPVKL--IRYSKWnvVRFCSGWSVFARENSLEMGDVCIFELIKID 303 89999999****************666444444444...44***..888888446666*******************98744 PP EE..EEEE CS B3 89 efelvvkv 96 +v + Manes.13G130900.2.p 304 VL--NVYI 309 44..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	14.395	1	81	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-7	1	81	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-21	3	81	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-20	4	88	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.8E-14	5	79	IPR003340	B3 DNA binding domain
CDD	cd10017	2.95E-16	5	79	No hit	No description
Gene3D	G3DSA:2.40.330.10	5.5E-17	215	311	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	7.5E-10	219	310	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.46E-17	219	311	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	9.9E-12	219	313	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.632	219	313	IPR003340	B3 DNA binding domain
CDD	cd10017	1.96E-14	219	311	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MNQEIPKKFI RKHGKDLPSP VILKVANGSI WKIELSKCHG EVWLEKGWQE FAKHHSLDHG 60 YFLVFKYEGH GHFCVFILDK SASEIQYPCE GICTADQKPE PVVENNEDGF SVEIMDDPSQ 120 GRKAGEMSPL SPHQQSCKRT RTDPTAKTLD SMFCSSTEYL SNKATPSTCI KVESSICSKG 180 FGGMLKQLTG SKKDACRKRT RSDSKALANA NKFVSSNPFF KSVVWLDKRK NSIVCVPVSF 240 SRRNIKDCVA NLTLQFGDRL WPVKLIRYSK WNVVRFCSGW SVFARENSLE MGDVCIFELI 300 KIDVLNVYIF KCDK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G130900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631899.1	0.0	putative B3 domain-containing protein Os03g0621600
TrEMBL	A0A2C9URL1	0.0	A0A2C9URL1_MANES; Uncharacterized protein
STRING	cassava4.1_012186m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	6e-34	B3 family protein

Link Out ? help Back to Top
Phytozome	Manes.13G130900.2.p