PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G130900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 333aa    MW: 37683.5 Da    PI: 8.7431
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G130900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.91.9e-1815981099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         + ++g l +pkkf+++hg++ ++   ++l+  +g  W+++l  +k+ g+++l+kGW+eF+k + L+ g f+vFk++g+  f  +v +++k
  Manes.13G130900.1.p 15 SIQEGKLEIPKKFIRKHGKDLPS--PVILKVANGSIWKIEL--SKCHGEVWLEKGWQEFAKHHSLDHGYFLVFKYEGHGHF--CVFILDK 98
                         445567***********988555..59999***********..********************************997777..7777665 PP
2B3407.2e-13237327196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          ffk  +  d  k++++++p +f +++ ++   + tl++     r W vkl   ++s++  + + +GW+ F+++n L+ gD+++F+l++ +
  Manes.13G130900.1.p 237 FFKSVVWLDKRKNSIVCVPVSFSRRNIKDCVANLTLQF---GDRLWPVKL--IRYSKWnvVRFCSGWSVFARENSLEMGDVCIFELIKID 321
                          89999999******************666444444444...44*******..888888446666*********************98744 PP

                          EE..EEEE CS
                   B3  89 efelvvkv 96 
                              +v +
  Manes.13G130900.1.p 322 VL--NVYI 327
                          44..5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.4E-26399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-24499IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-19597No hitNo description
PROSITE profilePS5086314.001699IPR003340B3 DNA binding domain
SMARTSM010194.0E-17799IPR003340B3 DNA binding domain
PfamPF023621.0E-151597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-17233329IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-10237328IPR003340B3 DNA binding domain
PROSITE profilePS5086311.632237331IPR003340B3 DNA binding domain
SMARTSM010199.9E-12237331IPR003340B3 DNA binding domain
CDDcd100172.62E-14237329No hitNo description
SuperFamilySSF1019368.24E-17237329IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
METEPHFFKL ILDASIQEGK LEIPKKFIRK HGKDLPSPVI LKVANGSIWK IELSKCHGEV  60
WLEKGWQEFA KHHSLDHGYF LVFKYEGHGH FCVFILDKSA SEIQYPCEGI CTADQKPEPV  120
VENNEDGFSV EIMDDPSQGR KAGEMSPLSP HQQSCKRTRT DPTAKTLDSM FCSSTEYLSN  180
KATPSTCIKV ESSICSKGFG GMLKQLTGSK KDACRKRTRS DSKALANANK FVSSNPFFKS  240
VVWLDKRKNS IVCVPVSFSR RNIKDCVANL TLQFGDRLWP VKLIRYSKWN VVRFCSGWSV  300
FARENSLEMG DVCIFELIKI DVLNVYIFKC DK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G130900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631899.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2C9URM10.0A0A2C9URM1_MANES; Uncharacterized protein
STRINGcassava4.1_012186m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-40B3 family protein