PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G129100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Dof
Protein Properties Length: 376aa    MW: 40211.3 Da    PI: 9.0218
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G129100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.6e-39107165361
               zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++
  Manes.13G129100.1.p 107 PENLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKST 165
                          57899***************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.1E-32109164IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.516110164IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-24110161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610112148IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFKASSTFSI IPLRPQKRIG QLSFQRQAPC FLLLHLHIHL IYKEEKMIQE LLGGAGLIGG  60
ERKISINGTI LEATPSPSPS LSSPSSSSTA TATTTATAAA NSTSSTPENL RCPRCDSSNT  120
KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKSTAVSTS VGKSSASMMK  180
TVASEIGRSS FGNGFDHELP SSPIMWASPQ NSHILSLLRA THNPNPNSST LPNSLSVKEE  240
GCLIGTHMIT EPSAANGALT ARTICLDPLS QVPSLGLCTP FWKNSQHQAQ QHQQSAGFIV  300
GHEAQNSGIQ ELYQRLRAST NFYTDNSPVV LSNVASSSTA ASTILESSPV AGGELGYWNP  360
TFSWSDLPTT NGACP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G129100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1447491e-55EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631964.10.0dof zinc finger protein DOF1.1-like isoform X1
TrEMBLA0A2C9URH60.0A0A2C9URH6_MANES; Uncharacterized protein
STRINGcassava4.1_024126m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72193247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07640.19e-33Dof family protein