PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G128300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 378aa    MW: 42430.6 Da    PI: 6.6693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G128300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1054.4e-33243298156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Manes.13G128300.2.p 243 KQRRCWSPELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 298
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.367240300IPR017930Myb domain
SuperFamilySSF466899.73E-19241301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-30242301IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-27243298IPR006447Myb domain, plants
PfamPF002494.5E-8245296IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MELSLDLSLV YVPKTISEYL MEISGIKDSR RKLSKLDDYI KKLEDEMRKI DAFKRELPLC  60
MLLLNDAIVR LKQEALQCKE LEGEDRTGKQ EFVSVKENSG GDGGGNMGND LSDKKNWMSS  120
VQLWNTNNIN SDSKQHDSKS ETKQRSEEDD DQSTCENPVQ LCNYKSKGGA FMPFKALSVF  180
EGTERKEEKE VVSRVTDLSL MTPVSQLGSC NLISKCNANI QTKMHNKPQQ LQQHQQEHPS  240
YKKQRRCWSP ELHRRFVDAL QQLGGSQVAT PKQIRELMQV DGLTNDEVKS HLQKYRLHIR  300
KLPASSAACQ ASGLWMAQDH CKDPSKPSIS ESNSPQGPFH ACGYAKGISS TGGNSGEAED  360
DDKSESHSWT DTNIRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14243296154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14243296255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00629PBMTransfer from PK14402.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G128300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631589.10.0transcription factor HHO5-like isoform X2
TrEMBLA0A2C9URD20.0A0A2C9URD2_MANES; Uncharacterized protein
STRINGcassava4.1_009666m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-78G2-like family protein