PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G128200.3.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 288aa    MW: 32347.1 Da    PI: 6.641
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G128200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.83.3e-4271061100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrrkC+++C++apyfp++qp kf  vh++FGasnv kll++l++ +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+ql
  Manes.13G128200.3.p   7 PCAACKFLRRKCTPECIFAPYFPSDQPLKFSSVHRVFGASNVAKLLNELNTAQREDAVNSLAYEAEERLRDPVYGCVGLISILQQRLKQL 96 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +++l ++k+e
  Manes.13G128200.3.p  97 QNDLYHAKKE 106
                          ****999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6536107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-417104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSSNSPCAA CKFLRRKCTP ECIFAPYFPS DQPLKFSSVH RVFGASNVAK LLNELNTAQR  60
EDAVNSLAYE AEERLRDPVY GCVGLISILQ QRLKQLQNDL YHAKKELAQY VGPSAMLPIL  120
QPPMFMPQQQ FPMMGIATGP AHGGQLMIRD HPQQPHQHPT NQQQQQQQFF EAQQLAATVA  180
VRDQQELFRA HDQQQQNQSQ HQQELVRFNS GFDAAGSVTA TGYNQLSAAS LGDYDNSYQI  240
LSQAEHHHHQ LQEQLLIQQE QQQPPQQTQL QQQRSGSEEG RSVSPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4731207129LOB family transfactor Ramosa2.1
5ly0_B2e-4731207129LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G128200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632359.10.0LOB domain-containing protein 36-like
RefseqXP_021632360.10.0LOB domain-containing protein 36-like
RefseqXP_021632361.10.0LOB domain-containing protein 36-like
RefseqXP_021632362.10.0LOB domain-containing protein 36-like
RefseqXP_021632363.10.0LOB domain-containing protein 36-like
RefseqXP_021632364.10.0LOB domain-containing protein 36-like
SwissprotQ9FKZ38e-79LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A251K0E50.0A0A251K0E5_MANES; Uncharacterized protein
STRINGcassava4.1_025385m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.17e-73ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]