PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G127300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 497aa    MW: 55488.4 Da    PI: 8.1629
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G127300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.61.3e-19131221199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                          f+k l++s+v++  ++ lp +f+++h   ++e++ +tlede g+ +++k+i  k++    l++GW++F+ a++L egD++vF+l++  +f
  Manes.13G127300.1.p 131 FVKSLVRSHVGSCFWMGLPGPFCRAHL--PREDTIITLEDECGKGFRMKYIAYKTG----LSAGWRQFCVAHQLLEGDVLVFQLIEPCKF 214
                          89************************5..456789***************666665....9***********************998888 PP

                          ..EEEEE-S CS
                   B3  91 elvvkvfrk 99 
                            +v ++r+
  Manes.13G127300.1.p 215 --KVYIIRA 221
                          ..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-20124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-24125222IPR015300DNA-binding pseudobarrel domain
CDDcd100179.26E-27129220No hitNo description
SMARTSM010193.8E-21131222IPR003340B3 DNA binding domain
PfamPF023621.0E-17131221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.689131222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAEKVKKEAE EGNLYKTASL GEEKLKSAGD EDVTLAQLSF HPSSPRPRPL AIASSSSVQG  60
FEKTGKRLKM KRRHSDSKIK HAMTSHAGKC ICCRQNKPTI DRSSTPGELK SPAMIRAEEV  120
QSNLESAFPS FVKSLVRSHV GSCFWMGLPG PFCRAHLPRE DTIITLEDEC GKGFRMKYIA  180
YKTGLSAGWR QFCVAHQLLE GDVLVFQLIE PCKFKVYIIR ANDLTEVDGA LGLLTLDPQI  240
KQNDAEIATV PCKSTKRKRP RSLPLAIVQK KQKKSGRSRI SVPKTAQLAE QSENDSEEVG  300
SEVLEGFKLS LPAIQFENVK GFENFNILVD GLVLDSELSE DVRRKYYDLC CSQNSFLHEN  360
LIKGINFKLI AGIISEIVNI ADGIRACNLT TSRNEFNTWD KTLKASEHFG MNVGFLRARL  420
SQLVSLAFDS EGATNTRRYI EARNEIVHTE DEIRNLEAKL VELKAAHDKF GSDIESLKSK  480
AESYELQFQE EVLAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G127300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633011.10.0B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A2C9URH30.0A0A2C9URH3_MANES; Uncharacterized protein
STRINGcassava4.1_006650m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.17e-39B3 family protein