PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G120700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 485aa MW: 53738.2 Da PI: 8.6176 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 161 | 210 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a++k++g Manes.13G120700.1.p 161 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAALKFRG 210 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.9 | 6e-14 | 253 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Manes.13G120700.1.p 253 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 303 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-9 | 161 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-15 | 161 | 219 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.978 | 162 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.59E-11 | 162 | 219 | No hit | No description |
SMART | SM00380 | 1.5E-30 | 162 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-17 | 162 | 218 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.41E-25 | 253 | 313 | No hit | No description |
SuperFamily | SSF54171 | 5.49E-17 | 253 | 313 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-9 | 253 | 303 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-31 | 254 | 317 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 254 | 311 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 254 | 311 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 255 | 266 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-6 | 293 | 313 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MWDLNDSPDQ RRDDESQGCS SQKTYLDGED DKGKRVGSMS NSSSSVVVIE DGSEVDGSGE 60 RSRIKKRTSK LFGFSVSHDD SMENDPPVTR QFFPVEDQEM GGISGGSGSG SGGGGGGRAG 120 FPRAHWCGVK FCQSESVASP KSVEVSQPLK KSRRGPRSRS SQYRGVTYYR RTGRWESHIW 180 DCGKQVYLGG FDTAHAAARA YDRAALKFRG VEADINFAIE DYEEDLKQMS NLTKEEFVHV 240 LRRQSTGFPR GSSKYRGVTL HKCGRWEARM GQFLGKKYVY LGLFDTEIEA ARAYDKAAIK 300 CNGKEAVTNF DPSIYANELN SSEYADHNLD LSLGHSGSIQ NSVGLDQQSA SMPFEADWRN 360 PGIRTKAQET RIQSPGSEAQ RFGQHRRPGE TQLFHGISPN YQIQFPSCSN GGRIGSDLSL 420 YPSDNHPHHH LRQQQQRQWQ SGPPLPPPNQ LVANAAASSG FPQQIRTPQN WLQKNGFHSI 480 LRLS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G120700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631644.1 | 0.0 | floral homeotic protein APETALA 2-like | ||||
Swissprot | P47927 | 1e-132 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2C9US99 | 0.0 | A0A2C9US99_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_006539m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-114 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G120700.1.p |