PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G100600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 501aa    MW: 55130.8 Da    PI: 6.2386
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11218274155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Manes.13G100600.1.p 218 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 274
                          57*******************4444.2344336655.779999**************98 PP
2AP250.36.1e-16317368155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Manes.13G100600.1.p 317 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 368
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-15218283IPR016177DNA-binding domain
CDDcd000181.33E-19218284No hitNo description
PfamPF008475.7E-9218274IPR001471AP2/ERF domain
SMARTSM003805.3E-22219288IPR001471AP2/ERF domain
PROSITE profilePS5103217.649219282IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12219283IPR001471AP2/ERF domain
PRINTSPR003672.5E-6220231IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18317377IPR016177DNA-binding domain
PfamPF008472.4E-10317368IPR001471AP2/ERF domain
CDDcd000181.81E-11317376No hitNo description
SMARTSM003803.2E-31318382IPR001471AP2/ERF domain
PROSITE profilePS5103219.203318376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18318376IPR001471AP2/ERF domain
PRINTSPR003672.5E-6358378IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQFISYEG SSTASPHYLI DNFYNNGWGS TKQEAQEATT  60
MAETSILTSF MNPETHHQQA PKLEDFLGDS SSFVRYSDNS QTETQDSSLT HIYDQGSAAY  120
FSDQQDLKAI AGFQAFSTNS GSEVDDSASI ARTQLGGVEL LGHSVESTGN ELGFSSCNGA  180
DNALSLAVNN QSSTEKAIVP AESDCTKKIA DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS  240
CRREGQARKG RQGGYDKEEK AARAYDLAAL KYWGPTATTN FPVTHYTKEL EEMKYVSKQE  300
FIASLRRKSS GFSRGASIYR GVTRHHQQGR WQARIGRVAG NKDLYLGTFA TEEEAAEAYD  360
IAAIKFRGMN AVTNFEMNRY DVEAIMKSAL PIGGAAKRLK LSLESEQKPM LNLEQQPQSS  420
SNNISFGSNP MPTVSAIPCG IPFENTTALY HHNLFHHLQS ANNYGGTDSS GSTSSMASPM  480
TLLPPQTAAA EFFIWPHQSY *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G100600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631721.10.0AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2C9URP50.0A0A2C9URP5_MANES; Uncharacterized protein
STRINGcassava4.1_024496m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]