PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G073500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 519aa    MW: 57022.6 Da    PI: 7.8943
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G073500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.2e-06244339
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         e+ C+ ++  ++  +C++++  lC +C +  H+       H++
  Manes.13G073500.1.p  2 EPLCEFCGVVRAVVYCKSDSARLCLNCDEFVHSAnclsrrHSR 44
                         689******99*********************65667667765 PP
2zf-B_box16.12.3e-054672430
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCl 30
                           C+++++++ +l C d++  +C++C 
  Manes.13G073500.1.p 46 LLCDKCNSQPSILRCLDDKLSICQNCD 72
                         68************************7 PP
3CCT65.81.3e-22341383143
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                          Re+a++RYkeK+ktR F K+irY+sRKa+A++R+RvKGrFvk 
  Manes.13G073500.1.p 341 REKAKMRYKEKKKTRIFGKQIRYASRKALADTRKRVKGRFVKV 383
                          99***************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.214147IPR000315B-box-type zinc finger
SMARTSM003368.8E-10147IPR000315B-box-type zinc finger
CDDcd000211.78E-6347No hitNo description
CDDcd000210.001864773No hitNo description
PfamPF062038.7E-18341383IPR010402CCT domain
PROSITE profilePS5101715.071341383IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD SARLCLNCDE FVHSANCLSR RHSRSLLCDK CNSQPSILRC  60
LDDKLSICQN CDWNNTNSCS SSGHHLQVLS CYTGRPSLAE FSRIWSSVLD ASPSTTTSYD  120
PEGLGTTSLP SLQGNEDSMI SCLKNKDNEG TFGLVTRKLN ELEPCMRSSN VIPQDPNSVP  180
HGRDQESFLP EDPNMSKAGC SNFKDLEIPD GEDLCEGLNM DDVALNFENG DDIFGCPQVT  240
SSGQQDCIAF QSPQVACSTS MIQAMYGSTS CLYMNPSFNR SINLGFPTTT RQIHSSISLS  300
PSNITGESSA ADYQDCGISP VFLTKESPRE LNLETSCPQA REKAKMRYKE KKKTRIFGKQ  360
IRYASRKALA DTRKRVKGRF VKVGEAYDYD PFGFKTLNLP FLVLTHLGAF PPLTTGTRRI  420
VGLSPADRLV PMPKKPACKA HAPPFPGACP IASRRVTNRL TLLRCSNHSG DDSDHFSGLP  480
MQPGVLVNQL GSFVRTTLST FYSFTVHKSL PWQKVKGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G073500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631799.10.0uncharacterized protein LOC110629194
TrEMBLA0A2C9UPU80.0A0A2C9UPU8_MANES; Uncharacterized protein
STRINGcassava4.1_024899m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.13e-86B-box type zinc finger protein with CCT domain