PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.13G065500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 49461.2 Da PI: 8.0453 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.7e-12 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p Manes.13G065500.1.p 55 PGEPDCIYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.4 | 8.7e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ Manes.13G065500.1.p 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 144 | 167 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ Manes.13G065500.1.p 144 KSCPYYMRTGSCKFGVACKFHHPQ 167 66********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.5e-13 | 292 | 317 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+++ tGtCkyG+ Ck++H++ Manes.13G065500.1.p 292 DQPECRYYMNTGTCKYGSDCKYHHPK 317 689*********************96 PP | |||||||
5 | zf-CCCH | 32 | 2.1e-10 | 339 | 363 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++ +G Ck+G++C+F H++ Manes.13G065500.1.p 339 QPVCSNYSMYGLCKFGPTCRFDHPF 363 689********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.295 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-9 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 59 | 82 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-5 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 95 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 99 | 123 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 101 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 139 | 168 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.352 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 142 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 143 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-5 | 145 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.549 | 290 | 318 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.1E-6 | 290 | 317 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.1E-10 | 292 | 317 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-7 | 293 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-6 | 296 | 317 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 336 | 364 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-5 | 336 | 363 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.72E-6 | 336 | 362 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MPDNSNNNNN NRQVKSNAVP NQSPDNIEDG IWRLKIHDNQ EQGGMAPSSP YPDRPGEPDC 60 IYYLRTGLCG YGSNCRFNHP PAALGTQFIE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPAP LGTGLPLTGP 180 AVSGPMGTSI MPSSGLPYLG GLPAWSLPRT PYVSGPRPQG PQAYMPVVLS PSQGVIPAQG 240 WNTYVGNLNP MSSASVLGSS LVYNSRNQGE SGSSGQVLLL STTTSNLPER PDQPECRYYM 300 NTGTCKYGSD CKYHHPKERI AQLATSSVGS PGLPSRPAQP VCSNYSMYGL CKFGPTCRFD 360 HPFPGYPYSY SLNLQPVSIF DSSLFTYPRM SPPALSSESP VSLSPKFPDW VRNPDTASNK 420 HQNSDKNTKI SDDHPEQAGS PPLRSSHSSS EPSHD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.13G065500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633192.1 | 0.0 | zinc finger CCCH domain-containing protein 3-like | ||||
TrEMBL | A0A2C9URE7 | 0.0 | A0A2C9URE7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_007335m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8030 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-124 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.13G065500.1.p |