PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G063600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 548aa    MW: 61257.4 Da    PI: 6.2682
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS461.26.2e-1411775471374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+++L+ cA+avs++d+ +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P+
  Manes.13G063600.1.p 177 LKHVLVVCAQAVSDKDMLKAQWLMDELRQMVSVSGEPIQRLSAYMLEGLVARLASSGSSIYKALRCNEPA---SAELLSYMHILYEVCPY 263
                          6899*****************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae ++vpfef
  Manes.13G063600.1.p 264 FKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLSRLAEMVKVPFEF 353
                          ***********************************************************998899999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +a +  +++le+L+v+pgEalaVn+++ lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f
  Manes.13G063600.1.p 354 HA-TAMSGCKVQLENLDVRPGEALAVNFAFVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFLETLNYYTAMF 442
                          **.8999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l
  Manes.13G063600.1.p 443 ESIDVTLPRDHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWRSRFKMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGAL 531
                          *****************************************************************************66.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r Lv+ +aW+
  Manes.13G063600.1.p 532 YLGWMNRDLVASCAWK 547
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.628151528IPR005202Transcription factor GRAS
PfamPF035142.1E-138177547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MQASKRVRSR GMSSRLYYQP IQEVEAYCMP QFQNLDHQLC SNGSSQGTSL SILNSHELYC  60
TLESSSANGS YTIHNSPSTI SFSPNGSPVS QQESQSYPPG THHSPDNNYG SPISSSCITD  120
DVHNFQNKLK ELENAMFGPD SDIIDSIEST FGNGTSMESP EMDSLRQVME AISRRDLKHV  180
LVVCAQAVSD KDMLKAQWLM DELRQMVSVS GEPIQRLSAY MLEGLVARLA SSGSSIYKAL  240
RCNEPASAEL LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DENRVHIIDF QIGQGSQWIT  300
LIQAFAARPG GPPHIRITGI DDSTSAYARG GGLDIVGKRL SRLAEMVKVP FEFHATAMSG  360
CKVQLENLDV RPGEALAVNF AFVLHHMPDE SVSTQNHRDR LLRLVKSLSP KVVTLVEQES  420
NTNTAPFFPR FLETLNYYTA MFESIDVTLP RDHKERINVE QHCLARDVVN IIACEGIERV  480
ERHELLGKWR SRFKMAGFTP YPLSSLVNAT IKTLLENYCD RYRLEERDGA LYLGWMNRDL  540
VASCAWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6218454626378Protein SCARECROW
5b3h_A3e-6218454625377Protein SCARECROW
5b3h_D3e-6218454625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633759.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2C9UQQ00.0A0A2C9UQQ0_MANES; Uncharacterized protein
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]