PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G057000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22564.6 Da    PI: 5.4755
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G057000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.42.5e-202068149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ie ksn qvtfskRr+g+ KKA+ELS L +a+vavi fs+  k++ +
  Manes.13G057000.1.p 20 KPIEAKSNLQVTFSKRRAGLVKKASELSLLSGAQVAVIAFSPGKKVFAF 68
                         68****************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.5351272IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-281271IPR002100Transcription factor, MADS-box
CDDcd002656.01E-331382No hitNo description
SuperFamilySSF554553.66E-261385IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-171434IPR002100Transcription factor, MADS-box
PfamPF003197.0E-212268IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-173449IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-174970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVTTNKHQKR TKGRRKIEIK PIEAKSNLQV TFSKRRAGLV KKASELSLLS GAQVAVIAFS  60
PGKKVFAFGH PNVETVLDRY LNEGFDTKEE DPMNNLSNNP SIQQWNREYE EAVRELEEEK  120
KCLAMIQEWN KMRESDLNSG FWWDDCVDDM GVEELEEYVR AMKELRKNVG IKANELMMAN  180
QNIGNALGSF GFGDEPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G057000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633775.11e-145agamous-like MADS-box protein AGL62
TrEMBLA0A2C9UQA41e-144A0A2C9UQA4_MANES; Uncharacterized protein
STRINGcassava4.1_024517m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-38AGAMOUS-like 62