PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.13G055600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 209aa MW: 23816.1 Da PI: 9.1674 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.7 | 3.4e-27 | 43 | 132 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k++ ++tr++ r gCka++ vk+ek+gkw+vt++e++HnH+l+ Manes.13G055600.1.p 43 RFYIEYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKSTIGPDKKTRSSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 132 5***************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-25 | 43 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MDLVKEVSEV DSAVEVKTLS VEGDGILEPH VGMEFESEDA ARRFYIEYAR RVGFVVRIMQ 60 RRRSGIDGRT LARRLGCNKQ GFSPNHKSTI GPDKKTRSSA REGCKATILV KMEKSGKWVV 120 TRFEKDHNHP LVVTANGFST TGDKDKKIEE LTKELEHQEQ LCAVYRERLL SFMNNVEEQT 180 EELSSKIKVI IDNVRKVESE VQKFSNRR* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.13G055600.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631921.1 | 1e-152 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SZL8 | 3e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2C9UNW4 | 1e-151 | A0A2C9UNW4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_017467m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-77 | FAR1 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.13G055600.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|