PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G048400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 350aa    MW: 39679.7 Da    PI: 8.5286
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43e-1244100155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Manes.13G048400.1.p  44 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEETAAHAYDLAALKYWG 100
                          57*******************99998898888888********************98 PP
2AP251.32.9e-16143194155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Manes.13G048400.1.p 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 194
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-844100IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-1544110IPR016177DNA-binding domain
CDDcd000184.20E-1644110No hitNo description
Gene3DG3DSA:3.30.730.105.1E-1345109IPR001471AP2/ERF domain
SMARTSM003803.0E-2045114IPR001471AP2/ERF domain
PROSITE profilePS5103218.58445108IPR001471AP2/ERF domain
PRINTSPR003673.9E-64657IPR001471AP2/ERF domain
PfamPF008475.4E-12143194IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18143204IPR016177DNA-binding domain
CDDcd000181.19E-23143204No hitNo description
Gene3DG3DSA:3.30.730.101.1E-17144203IPR001471AP2/ERF domain
SMARTSM003801.2E-24144208IPR001471AP2/ERF domain
PROSITE profilePS5103218.334144202IPR001471AP2/ERF domain
PRINTSPR003673.9E-6184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAKISQRSQR NNTAANTSAT NSTTTKPKRT RKTVPRDSPP QRSSIYRGVT RHRWTGRYEA  60
HLWDKNCWNE SQNKKGRQGA YDDEETAAHA YDLAALKYWG QDTILNFPLS TYQEELKDME  120
GQSKEEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE  180
AATAYDMAAI EYRGLNAVTN FDLSRYIKWL RPNARNETHQ NHNHIDNGNL IPNPSQDFGL  240
SFTSYQQSLS TKENTTSLPR PSGGSVGSAS SALGLLLQSS KFKEMLERTS SNDYPLMPLE  300
SDPPRKSFPD DIQTYFDCQD SSNYTEGDDI IFGELNTFSS PIFHCELDC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G048400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741611e-140AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632327.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-120AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9UNY00.0A0A2C9UNY0_MANES; Uncharacterized protein
STRINGcassava4.1_025233m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-105ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]