PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G047200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 315aa    MW: 36660.8 Da    PI: 4.5573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G047200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.61.4e-1740127286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                          Wt+qe+ +Li+ ++e++ +l+rg+lk+ +Weev+  +            ++ +qC++k+e+l+kr++++k++ +    + + +++yfd +
  Manes.13G047200.1.p  40 WTHQETIHLIQSYQEKWYSLKRGQLKASQWEEVAVTVaarcgyDYSHPAKTVIQCRHKMEKLRKRFREEKRRISI---TGVCSWQYFDLM 126
                          ***********************************99855554333446889****************9998886...35568****999 PP

             trihelix  86 e 86 
                          e
  Manes.13G047200.1.p 127 E 127
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-1839129No hitNo description
SMARTSM005952.2E-647134IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MSTPSPSPSP SPPPPSEPLS QSPPSNPRPL STKKPHPVPW THQETIHLIQ SYQEKWYSLK  60
RGQLKASQWE EVAVTVAARC GYDYSHPAKT VIQCRHKMEK LRKRFREEKR RISITGVCSW  120
QYFDLMESLE RGPMPISARP LALVPPNDNV DEDDEDFEEE AEVEDAEEEE EEEDYGHRSK  180
SRSINYILRK PTIVNRFAGS DSGFLRDTMN KRKREEMVED ENDDDGDDDD DNGEEEGERR  240
KGVELGLAEE IRAFAQRIVG MERKKMEMMK ETEKWRMEME NRRMEMILDS QRKIVSMISD  300
AFDSQEDLQM EQEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G047200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633828.10.0trihelix transcription factor ASIL1
TrEMBLA0A2C9UP250.0A0A2C9UP25_MANES; Uncharacterized protein
STRINGcassava4.1_034361m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100872835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.16e-38Trihelix family protein