PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G013200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 584aa    MW: 65471.9 Da    PI: 6.1035
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G013200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like772.4e-24200253155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Manes.13G013200.1.p 200 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 253
                          68*******************.9*******************************8 PP
2Response_reg75.52e-25201281109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++l+++l+k  y ev+++  + +al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + +
  Manes.13G013200.1.p  20 VLVVDDDLTWLKILEKMLKKCSY-EVTTCGLAIDALHLLRERKdrYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSQVMK 107
                          89*********************.***************888778**********************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ ++el++
  Manes.13G013200.1.p 108 GVQHGACDYLLKPIRMKELRN 128
                          ******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.6E-1471547IPR017053Response regulator B-type, plant
SuperFamilySSF521725.27E-3517147IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-4317141No hitNo description
SMARTSM004487.2E-3118130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.77119134IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.4E-2320129IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.52E-2921134No hitNo description
Gene3DG3DSA:1.10.10.607.8E-28198258IPR009057Homeodomain-like
SuperFamilySSF466894.3E-17198257IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-21200253IPR006447Myb domain, plants
PfamPF002491.8E-7202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MMDNGFSSPR HDPFPAGLRV LVVDDDLTWL KILEKMLKKC SYEVTTCGLA IDALHLLRER  60
KDRYDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSQVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVLRKKIHE VRDIEILEGM ESIQMTRNGL DQSSDGHLLC GEDLTSVKKR  180
KEAENKHDDK DPGDSSSTKK ARVVWSVDLH QKFVKAVNQI GFDKVGPKKI LDLMNVPWLT  240
RENVASHLQK YRLYLSRLQK ENDTKTSVGG GKHSDSPSRD SAGSFGIQNS INIQRNDISN  300
GSYGFSGNSL IVRNVEPRSQ ENERKGIVSK TAVEPKRALA VEVPDPCKPK SSEMEFGHSF  360
TSPASEVNFA EFGSNFPTKF SWCAIPQSQL KQEQNPLHLD AGFSQRTRPG KQQHIQVDYP  420
QPSPPIISGS SVTERNMDGS VKIKPIYDEC RNNGSQVSSA RSTMDSYQVQ TKTYEVNHQA  480
YEPISTNTSS LKNQAAFNLS SISDLESAQK SINWAMSPLA TLDDDFQVRW VQGDCYAMNL  540
GLQNIEFPEY FDGGLLADVP THLYENLYDS TECSVIEQGL FIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17196258163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G013200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633533.10.0two-component response regulator ARR11-like
TrEMBLA0A2C9UNZ60.0A0A2C9UNZ6_MANES; Two-component response regulator
STRINGcassava4.1_004317m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131response regulator 11