PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G001800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 702aa    MW: 76936 Da    PI: 6.6873
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G001800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.6e-15280339155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Manes.13G001800.1.p 280 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 339
                          57*******************666664478446*************************98 PP
2AP246.78e-15382433155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Manes.13G001800.1.p 382 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 433
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-11280339IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-17280349IPR016177DNA-binding domain
CDDcd000181.13E-22280349No hitNo description
Gene3DG3DSA:3.30.730.101.9E-15281348IPR001471AP2/ERF domain
SMARTSM003802.0E-29281353IPR001471AP2/ERF domain
PROSITE profilePS5103219.164281347IPR001471AP2/ERF domain
PRINTSPR003673.7E-6282293IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-17382443IPR016177DNA-binding domain
PfamPF008471.0E-9382433IPR001471AP2/ERF domain
CDDcd000187.09E-25382443No hitNo description
Gene3DG3DSA:3.30.730.105.1E-18383442IPR001471AP2/ERF domain
SMARTSM003801.5E-33383447IPR001471AP2/ERF domain
PROSITE profilePS5103219.045383441IPR001471AP2/ERF domain
PRINTSPR003673.7E-6423443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MNNWLGFSLS PQQLPSQSDH HQNHSQNTSS RLGFHSDEIS ETDVSGECFD LTSNSTLPSL  60
NLPATFGILE AFRNDQSQDW NMKGLGMNQD TTYKTNSDHL SVLMGTSCSS QNLDQNQEPK  120
LENFLGGHSF ANHEHKLPAG CNTMHMFQNC SSQQATPHDG TSIFGEDNNS INTGSNSSSI  180
GLSMIKTWLR NQPAPTQQHE HKNNGGGAQT LSLSMSTGSQ SGSPLPLLGT NTGETNNNGG  240
DNHSSSDNNK QKIATGIDSQ TGALESVPRK SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD  300
NSCRREGQTR KGRQVYLGGY DKEEKAARAY DLAALKYWGT TTTTNFPISN YEKELEEMKH  360
MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  420
AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI LESTTLPIGG AAKRLKDAEQ AERKIDSHRA  480
EHENMSSQFS DGISSYGTAH HPWSTVAFQQ SHHQPFSLHY PYGQRLWCKQ EQDQLQVGNT  540
HNFFQPSILH NLMSMDSSSM EHSSGSNSVI YSSGGADGNN GVNGSYHGMG SRAIPMATTV  600
VANDDGEQNQ GNGYEDGEVK VVGYENMLGS SDPFHGRSLY YLSQQSAAEG GGVVKGIISA  660
YDDEGSACNN WVPTAVPTVG TRSSNMAVCH GASTFAVWNH T*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G001800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633387.10.0AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2C9UMS30.0A0A2C9UMS3_MANES; Uncharacterized protein
STRINGcassava4.1_032986m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-132AP2 family protein