PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G157600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YB

Protein Properties

Length: 208aa MW: 23282.8 Da PI: 5.7555

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G157600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.5	6.1e-56	36	131	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv+plk+yl++yr Manes.12G157600.1.p 36 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKLYLSRYR 125 89************************************************************************************** PP NF-YB 92 elegek 97 ++egek Manes.12G157600.1.p 126 DIEGEK 131 *996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.2E-52	29	153	IPR009072	Histone-fold
SuperFamily	SSF47113	1.27E-39	38	155	IPR009072	Histone-fold
Pfam	PF00808	3.8E-28	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.3E-18	69	87	No hit	No description
PROSITE pattern	PS00685	0	72	88	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.3E-18	88	106	No hit	No description
PRINTS	PR00615	1.3E-18	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MEDESHGSCP NVPSRGSPES PCLKSTSTNN NNNNNKEQDR FLPIANVGRI MKKVIPGNGK 60 ISKDAKETVQ ECVSEFISFV TGEASDKCQR EKRKTINGDD IIWAITTLGF EDYVAPLKLY 120 LSRYRDIEGE KLNIPKQQRT TDQRLQQTPQ EQDQSLPSFN SVYSSTTSLI SQPSFVPADQ 180 SFSLNFSPNS IQKQLQQHDQ IDSVGHW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-44	36	126	7	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G157600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630565.1	1e-153	nuclear transcription factor Y subunit B-7
Swissprot	Q9SIT9	2e-74	NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBL	A0A2C9UX02	1e-152	A0A2C9UX02_MANES; Uncharacterized protein
STRING	cassava4.1_024313m	1e-153	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13249	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	2e-75	nuclear factor Y, subunit B7

Link Out ? help Back to Top
Phytozome	Manes.12G157600.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]