PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G155900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 301aa    MW: 33550 Da    PI: 9.842
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G155900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181762147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         rg W + Ede+l ++v+q+G+ +W+ Ia++++ gR++k+c++rw++ 
  Manes.12G155900.1.p 17 RGHWRPAEDEKLRQLVNQYGPQNWNFIAEHLQ-GRSGKSCRLRWYNQ 62
                         899*****************************.************96 PP
2Myb_DNA-binding56.56.3e-1869113147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ +
  Manes.12G155900.1.p  69 KKPFTEEEEERLLKAHQIQGNR-WASIARLFP-GRTDNAVKNHYHVV 113
                          689*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1191267IPR017930Myb domain
SuperFamilySSF466891.39E-2915110IPR009057Homeodomain-like
SMARTSM007173.3E-161665IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-271870IPR009057Homeodomain-like
CDDcd001674.94E-152061No hitNo description
PfamPF139211.4E-182080No hitNo description
SMARTSM007171.7E-1568116IPR001005SANT/Myb domain
PROSITE profilePS5129419.13468118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.9E-2171116IPR009057Homeodomain-like
CDDcd001671.13E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MENGRGSSSD SGKSCHRGHW RPAEDEKLRQ LVNQYGPQNW NFIAEHLQGR SGKSCRLRWY  60
NQLDPNINKK PFTEEEEERL LKAHQIQGNR WASIARLFPG RTDNAVKNHY HVVMARRKRE  120
RLSSVYGKRS FHLHPTESNK KITTPGSNFE SYYRLHQPLD HHSKLGFQSN GYFTMCSSSS  180
PSWTISASTI TNESLNFDFL DGKGKGYMNS SSSSSHTKDG SHGFNGSMYG GYYQSLFGSS  240
AQISNSTKVA ANNNNPLANL LSYGGGNHAS KSATLQKELE DGAINQKDVS FIDFLGVGIS  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-35171177107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G155900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346316e-75KM034631.1 Jatropha curcas clone JcMYB010 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631408.10.0transcription factor MYB117
SwissprotQ9SEZ41e-58MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2C9UWX20.0A0A2C9UWX2_MANES; Uncharacterized protein
STRINGcassava4.1_025440m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-73myb domain protein 69
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]