PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G155800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family B3
Protein Properties Length: 360aa    MW: 40753.5 Da    PI: 5.2
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G155800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-17290298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3  2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                         +k ++ps+v+   +l l k+f++eh+ k  ++++++le+esg  ++ k+    k+  + l++GW++F  a++L egD++vF+l++ ++f  +
  Manes.12G155800.1.p  2 IKLMLPSHVSGGFWLGLNKQFCDEHMPK--QDTMIVLENESGMNYQAKY--LVKK--VGLSGGWRGFSIAHELLEGDVLVFQLVRPTKF--K 85
                         6899*********************844..888****************..5555..44************************987777..7 PP

                         EEEE- CS
                   B3 94 vkvfr 98
                         v ++r
  Manes.12G155800.1.p 86 VYIVR 90
                         77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998192IPR003340B3 DNA binding domain
SMARTSM010193.1E-21192IPR003340B3 DNA binding domain
CDDcd100172.63E-23290No hitNo description
Gene3DG3DSA:2.40.330.105.7E-18292IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-14290IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-20295IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MIKLMLPSHV SGGFWLGLNK QFCDEHMPKQ DTMIVLENES GMNYQAKYLV KKVGLSGGWR  60
GFSIAHELLE GDVLVFQLVR PTKFKVYIVR VNGLEEVDGA LGLLKLDSCI KQRSPENLST  120
ATEAIEYQET EPHLMCNPDL NNQKYVNMAN GANYGHLSDH SENEREDLGF DVLDGIRLSE  180
SAVDFNQVKS FDDFDIIING LVINPELSRH LQSKYYDLCC SQRSFLHEQL LGGLNCKLAA  240
GVIAETINIA DAIRASKLTN PLESFATWKR TLKAFQTLGM NINFLLDRLD QLTSLAAKSR  300
RHKEARIERV NAEEELRTLE TKLLEIKETS SRLDIEIQQL EAKSENYELK FREVAEAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G155800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630147.10.0B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A2C9UX330.0A0A2C9UX33_MANES; Uncharacterized protein
STRINGcassava4.1_023034m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-34B3 family protein