PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G150200.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Trihelix
Protein Properties Length: 494aa    MW: 56756.3 Da    PI: 5.6992
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G150200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.32.9e-3043127187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW++qe++aL+++r++m+ ++r++ lk+plW+evs+ ++e g++rs+k+Ckek+en+ k+y+++keg+++++++  +t+++f+qlea
  Manes.12G150200.1.p  43 RWPQQETMALLKIRSDMDAAFREAGLKAPLWDEVSRLLSELGYNRSAKKCKEKFENIYKYYRRTKEGRSSKSNG--KTYRFFEQLEA 127
                          8********************************************************************97554..46*******85 PP
2trihelix103.31.8e-32327412187
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                          rW+k+e+ aLi++r++++ +++++  k+plWeevs++m++ g++r++k+Ckekwen+nk++k+++e++k+r +++s+tcpyf+ql+a
  Manes.12G150200.1.p 327 RWPKEEIEALIRLRTNLDMQYQENGPKGPLWEEVSAAMKKLGYNRNAKRCKEKWENMNKYFKRVRENNKRR-ADDSKTCPYFHQLDA 412
                          8********************************************************************98.89999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01940102IPR001005SANT/Myb domain
PROSITE profilePS500907.03942100IPR017877Myb-like domain
PfamPF138373.4E-2042128No hitNo description
CDDcd122039.44E-2442107No hitNo description
SMARTSM007171.8E-4324386IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-5325384IPR009057Homeodomain-like
PfamPF138371.7E-22326413No hitNo description
PROSITE profilePS500907.677326384IPR017877Myb-like domain
CDDcd122033.42E-25326391No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEISTLPENS SAVTGNRGDE SGGFREEERV ESEEGDRYLI GSRWPQQETM ALLKIRSDMD  60
AAFREAGLKA PLWDEVSRLL SELGYNRSAK KCKEKFENIY KYYRRTKEGR SSKSNGKTYR  120
FFEQLEALDN SNGNNHVLLS SPSPDKVHSS MAATPVNPVN VNIGALPSSF QSPSAFVDSH  180
CTSTTSTSSE ESEGTRKKKR RLTQFFERLM KKVIEKQENL QRKFLDAIEK CEQDRMAREE  240
AWKMQELDRI KRERELLMQE RSIAAAKDAA VLSFLQKFSE QTSSVQLSEN QTIPVQLSEN  300
QISPVEIVVK AQENNSPQNF VHMSSSRWPK EEIEALIRLR TNLDMQYQEN GPKGPLWEEV  360
SAAMKKLGYN RNAKRCKEKW ENMNKYFKRV RENNKRRADD SKTCPYFHQL DALYKVKTRK  420
VDNSVNCGQE MKPEELLMHM MGSQEERQQQ ESATTEDGES ENVDQNQEGD RENDDEDGYR  480
IVANDPSAVA IME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KKKRR
2196201KKKRRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G150200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630534.10.0trihelix transcription factor GTL1-like
SwissprotQ391171e-122TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2C9UWN70.0A0A2C9UWN7_MANES; Uncharacterized protein
STRINGcassava4.1_006275m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-130Trihelix family protein