PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G144700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 230aa    MW: 25969.4 Da    PI: 9.2015
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G144700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.9e-32152210159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vk++ +prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Manes.12G144700.1.p 152 LDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 210
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-33137210IPR003657WRKY domain
SuperFamilySSF1182901.44E-28144211IPR003657WRKY domain
PROSITE profilePS5081129.126147212IPR003657WRKY domain
SMARTSM007745.3E-37152211IPR003657WRKY domain
PfamPF031063.3E-25153209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MASTSQAMLN QGLFEEQEMP TQMGFFSFAP HLNFPQLGSC HQSLKSFTIP HSLVADAPST  60
ANLAETLISS AAAKQREDVT AYLGGPHLLS LQRSSANLWA WGEVNECLSS KRSGGDDHHL  120
GVSAMKMKKI KARRKVREPR FCFKTMSDVD VLDDGYKWRK YGQKVVKNTL HPRSYYRCTQ  180
DNCRVKKRVE RLAEDPRMVI TTYEGRHVHS PSHDLEDSQA NSQLNNFFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-27143209874Probable WRKY transcription factor 4
2lex_A6e-27143209874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G144700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630086.11e-175probable WRKY transcription factor 13
SwissprotQ9SVB76e-63WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A2C9UXR31e-174A0A2C9UXR3_MANES; Uncharacterized protein
STRINGcassava4.1_015466m1e-174(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.12e-56WRKY DNA-binding protein 13