PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G143500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 23830.1 Da PI: 6.6633 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2.1e-30 | 125 | 183 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver++ed ++v++tYeg Hnhe Manes.12G143500.1.p 125 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDREDSSYVITTYEGIHNHE 183 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-32 | 112 | 185 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-27 | 118 | 185 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.192 | 120 | 185 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-34 | 125 | 184 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 126 | 183 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSTSYSSFLQ PPIMDYPSDP NPNNLPPHQN QYFHQNILDP FPAEFQLSDY LMLDADINGF 60 ADDSTTSEQS MISSEQVFSG GCAGGDGGAT SRNTSSNRCK KGMKKDKSEV GNRVAFRTKS 120 DLEIMDDGFK WRKYGKKSVK NSPNPRNYYK CSSGGCNVKK RVERDREDSS YVITTYEGIH 180 NHESPCVVYY NQIPADGWSL QPSSSPSQHS SSSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-25 | 112 | 185 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G143500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827617 | 0.0 | KT827617.1 Manihot esculenta WRKY transcription factor 42 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629866.1 | 1e-160 | probable WRKY transcription factor 51 isoform X1 | ||||
Swissprot | Q93WU9 | 8e-52 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2C9UWQ8 | 1e-158 | A0A2C9UWQ8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_016594m | 1e-149 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-51 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G143500.1.p |
Publications ? help Back to Top | |||
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