PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G134000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 340aa    MW: 37196.8 Da    PI: 7.9783
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G134000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.71.5e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv++++++G g+W++ ++  g++R++k+c++rw +yl
  Manes.12G134000.1.p 14 KGPWTPEEDQILVKYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding54.92e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +++++  lG++ W++Ia++++ gRt++++k++w+++l
  Manes.12G134000.1.p  67 RGKFSQEEEQTILNLHSVLGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.104961IPR017930Myb domain
SuperFamilySSF466891.15E-3211108IPR009057Homeodomain-like
SMARTSM007173.0E-161363IPR001005SANT/Myb domain
PfamPF002493.6E-181461IPR001005SANT/Myb domain
CDDcd001674.39E-131661No hitNo description
PROSITE profilePS5129426.37162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2865117IPR009057Homeodomain-like
SMARTSM007179.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.2E-1667112IPR001005SANT/Myb domain
CDDcd001671.51E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRSPCCDES GLKKGPWTPE EDQILVKYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDVKRGKF SQEEEQTILN LHSVLGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPVTHRPRT NIFSNLPHLI ALANLKELID HHSVEEHAVR LQAEAVQMAG FQYLQYLLQP  180
QSQPHPPASV VTSSNYVANG SSGFSDMETS NLLNSLASIN DGPVSSSLAL PGLSDSISFS  240
HLPDLQIPCS YQTPLSKNNS TDKANHPEFT VFSQGAQNSP KSPWLPSSSS TPSPPSTGAP  300
TLTQTTMWEA SSSSSSFGGE ASTIWQGLLL EDSLFKAIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G134000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4309332e-32AM430933.2 Vitis vinifera contig VV78X227166.3, whole genome shotgun sequence.
GenBankAM4421632e-32AM442163.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X189718.9, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631374.10.0transcription factor MYB41-like
SwissprotQ9S9Z21e-103MYB93_ARATH; Transcription factor MYB93
SwissprotQ9SBF31e-103MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A2C9UXF30.0A0A2C9UXF3_MANES; Uncharacterized protein
STRINGcassava4.1_026969m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-99myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]