PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G133700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family C2H2
Protein Properties Length: 386aa    MW: 42261.5 Da    PI: 5.9476
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G133700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.72.5e-07160181223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                           C++Cgk F+r  nL+ H+r H
  Manes.12G133700.1.p 160 FCEICGKGFKRDANLRMHMRAH 181
                          6*******************99 PP
2zf-C2H211.30.0011279295521
                          TTTEEESSHHHHHHHHH CS
              zf-C2H2   5 dCgksFsrksnLkrHir 21 
                           Cg++Fsrk+ L  H+ 
  Manes.12G133700.1.p 279 SCGTTFSRKDKLFGHMA 295
                          5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.82E-6156182No hitNo description
SMARTSM003550.0015159181IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.967159186IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-5159181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0021160179No hitNo description
PROSITE patternPS000280161181IPR007087Zinc finger, C2H2
SMARTSM0035554210243IPR015880Zinc finger, C2H2-like
SMARTSM0035513248270IPR015880Zinc finger, C2H2-like
SMARTSM00355200276300IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSNPSESAAF PTGYSFPPST ADPRVPLQNL SMVRVRMDSV QQFLADSVNN NNLMSKGQME  60
MVSAEISSAI HQIIVNGAAL LACSQSVVEP PTAGKLAERL SDPPDPKFAA ELSNSLEDNS  120
DKGNQPAVFS LKVEERDDFD VDCDIVELDA VELLAEHVHF CEICGKGFKR DANLRMHMRA  180
HGNQFKTPEA LAKPDKGKES SAAATRKTRF SCPFEGCNRN KKHKKFRPLK SVICVRNHFK  240
RSHCPKMYSC NRCNKKSFSV VADLKSHLKH CGESRWKCSC GTTFSRKDKL FGHMALFEGH  300
MPAVVGEDDD RAKSDVAAME ADENGEGTIE EGDQLQGNSV DNGLFEGLLD GFASIEGYNL  360
EDVLESARNG WGSEMEGLCG GTERS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G133700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7907021e-110JF790702.1 Manihot tripartita clone Mtr_gDNA_582188 NBS domain disease resistance protein-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631166.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2C9UW630.0A0A2C9UW63_MANES; Uncharacterized protein
STRINGcassava4.1_009526m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-82C2H2 family protein