PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G125500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family AP2
Protein Properties Length: 497aa    MW: 54660.3 Da    PI: 6.1568
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G125500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.32.1e-14216275155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Manes.12G125500.1.p 216 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDREEKAARAYDLAALKYWG 275
                          57*******************666664478446*************************98 PP
2AP250.36e-16318369155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Manes.12G125500.1.p 318 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 369
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-17216284IPR016177DNA-binding domain
PfamPF008472.5E-11216275IPR001471AP2/ERF domain
CDDcd000181.84E-22216285No hitNo description
SMARTSM003804.1E-29217289IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-16217284IPR001471AP2/ERF domain
PROSITE profilePS5103219.427217283IPR001471AP2/ERF domain
PRINTSPR003671.6E-6218229IPR001471AP2/ERF domain
PfamPF008472.3E-10318369IPR001471AP2/ERF domain
CDDcd000181.73E-11318379No hitNo description
SuperFamilySSF541716.28E-18318379IPR016177DNA-binding domain
SMARTSM003801.6E-31319383IPR001471AP2/ERF domain
PROSITE profilePS5103219.203319377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-18319378IPR001471AP2/ERF domain
PRINTSPR003671.6E-6359379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQFTSYEG NSTASPHYLI DNFYANGWGS SKEAQGTTTM  60
AESSIITSFI DPETHHPQAP KLEDFLGDSS SIVRYSDSQT ETQDSSLTHI YDQSSAAYFN  120
DQQDLKAIAG FQAFSTNSGS EVDDSASIAR TQLGGGEFVG QSIESSGNEL GFSNCTDANN  180
ALSLGINNQC STEKAIVPAE SDCPKKIADT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR  240
REGQARKGRQ VYLGGYDREE KAARAYDLAA LKYWGPTATT NFPVTNYNKE LEEMKYVSKQ  300
EFIASLRRKS SGFSRGASIY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY  360
DIAAIKFRGM NAVTNFEMSR YDVAAIMKSV LPIGGTAKRL KLSLEAEQKP TLNHEQQPQG  420
SSSNTISFDS IPPVSIPCGI PFENTSALYH HNLFHHLQSA NNIGGTDSSG STSSMATPMT  480
LMPQTADFFV WPHQSY*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G125500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629971.10.0AP2-like ethylene-responsive transcription factor AIL6
RefseqXP_021629972.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2C9UW570.0A0A2C9UW57_MANES; Uncharacterized protein
STRINGcassava4.1_020976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.20.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]