PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.12G121100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 339aa MW: 38218.8 Da PI: 4.4502 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.7 | 7.3e-12 | 166 | 209 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Manes.12G121100.1.p 166 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 209 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-15 | 163 | 222 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 166 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.3E-15 | 167 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.95E-5 | 167 | 213 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MELSQHGFLE ELLQAPRRDS SSWASFPSTG ATEFFSNGWN FDSFDENTPN PSFIGFSTSP 60 TEPTCTFDCP FSDQTYPFVD SFTVPSEIND HTPPFPAQDQ DYPSMVEDEE FGLLTTHCSF 120 EEISSNGCKV EIEQPASNNA QVFNMGLVTE KKSKSKKLEG QPSKNLMAER RRRKRLNDRL 180 SMLRSIVPKI SKMDRTSILG DTIDYMKELL ERVNKLQEEE EEEEEGEESK NEMNLRTKLK 240 DLKPSEVVVR NSPKFNVERT EMDTRIDICC SAKPGLLLST VNTLEALGLE IQQCVISCFN 300 DFSMQASCSE AAEQRKLIGP EDIKQALFRT AGYGGRCL* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 168 | 175 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.12G121100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629893.1 | 0.0 | transcription factor bHLH93-like | ||||
Swissprot | Q9LSL1 | 6e-88 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A2C9UVY9 | 0.0 | A0A2C9UVY9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_011286m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65640.1 | 3e-87 | beta HLH protein 93 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.12G121100.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|