PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G117800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 678aa MW: 75540.7 Da PI: 6.908 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.9 | 3.9e-16 | 326 | 385 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Manes.12G117800.1.p 326 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 385 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 430 | 479 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Manes.12G117800.1.p 430 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 479 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-16 | 326 | 395 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.26E-22 | 326 | 393 | No hit | No description |
Pfam | PF00847 | 6.7E-13 | 326 | 385 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 327 | 394 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 327 | 393 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-29 | 327 | 399 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 328 | 339 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-17 | 428 | 488 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.44E-24 | 428 | 489 | No hit | No description |
PROSITE profile | PS51032 | 19.177 | 429 | 487 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 429 | 487 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 429 | 493 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 430 | 479 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-6 | 469 | 489 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MKSMNNDDHS NNNTHWLGFS LSPHMQMEVP SASNHHYQAQ SATSSVPTAI SASLFHSQSH 60 SHLSYGNLFD VEGENGGCYS TLPVMPLKSD GSLCLMEALT RSQLKATMVT SSTPKLEDFF 120 GGATMGTHHY ETNDREAMAL SLDSMYYHQD SEHQPNNQNC LNHLQQNPSR HQQHHQIQVQ 180 QYPYYDTNFK SYEMFVGEEP KETQQASDCN LQLPTVGDDG IKGMRNWVSR NYTSNHAMDQ 240 QKMISCMGEN GGESGAISAM AYGDLQSLSL SMSPGSQSSC VTGSQQISHA GTDCAAMETK 300 KRGPDKVDQK QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ 360 VYLGGYDMEE KAARAYDLAA LKYWGPSTHI NFPLENYQKE LEEMKNMTRQ EYVAHLRRKS 420 SGFSRGASMY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGV 480 NAVTNFDITR YDVERIMASN TLLAGELARR NKDTGSGNEA INHNPSTQNG IGEAIPSLKN 540 DESEPDWKMV LYQSSQQIDQ KATNAMDNYK TQIFSLNPDN VIGIDSMSSV HQQEVEDSTK 600 MGTHLSNASS LVTSLSSSRE GSPDRTRLPM LFAMPPSATS KLLTNPASNM NSWIPTAQLR 660 PAVSLPQLPV FASWTDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G117800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629464.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-171 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2C9UVR4 | 0.0 | A0A2C9UVR4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_003308m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-134 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G117800.1.p |