PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G117600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRF
Protein Properties Length: 449aa    MW: 49554.4 Da    PI: 6.3188
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.17.3e-24227271145
                  WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                          d+epgrCrRtDGKkWRCsr+v++++k+CErHl+rgr+rsrk++e 
  Manes.12G117600.1.p 227 DTEPGRCRRTDGKKWRCSRDVVGDQKYCERHLNRGRHRSRKHVEG 271
                          689***************************************986 PP
2QLQ49.31.5e-17155189135
                  QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 
                          ++FT +Q ++L+ Q+l++KyL+an+PvPp Ll+++
  Manes.12G117600.1.p 155 GPFTLSQRMELEYQALIFKYLSANVPVPPALLLPL 189
                          59*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-7155191IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.1E-13156189IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.325156191IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.635227271IPR014977WRC domain
PfamPF088799.5E-20229270IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MDFGFPSFDD FVVSGSTQAA SQAIDSNDQK AQQFKLVREE RPSGAWRTTS TYMPAGTVDF  60
SVPKTMLLSQ AATLWTPADS MVDGDACQPG KMLNYPSLRP EVAPFPSKNY GLAQRTPLNS  120
TGFLHYQSLP SAYPTSGCYG SGSLNVTGPS IVARGPFTLS QRMELEYQAL IFKYLSANVP  180
VPPALLLPLK IKPIDTYPYG SPCGFYRPAS MGWSSTLDVS CMGSPADTEP GRCRRTDGKK  240
WRCSRDVVGD QKYCERHLNR GRHRSRKHVE GQTVPSTTQQ TANSEVVPAA TSISALLISH  300
GNATDKHVNG IIKQQSKISE AVTAVNLKSD ESPFTVLKPV EEESSLEFGH ISSESFISYS  360
KRRRSVKSSD CEPFLSFNEQ ESEDEHPLRQ FIEDWPEDQC SRSTISWPQE LKSDWTQLSM  420
STPTQEKIAF SPLSSSREFD PCTNGFNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631387.10.0growth-regulating factor 2-like isoform X1
TrEMBLA0A2C9UVV00.0A0A2C9UVV0_MANES; Uncharacterized protein
STRINGcassava4.1_033453m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.14e-47growth-regulating factor 1