PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G115100.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB_related | ||||||||
Protein Properties | Length: 304aa MW: 32978 Da PI: 10.4503 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 1e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI R+ ++k++w++ Manes.12G115100.5.p 5 KQKWTPEEEAALKAGVLKHGTGKWRTILMDPEfsailRQRSNVDLKDKWRN 55 79***********************************99***********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.487 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.94E-15 | 2 | 64 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-6 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.42E-18 | 6 | 57 | No hit | No description |
SMART | SM00526 | 1.4E-12 | 116 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
PROSITE profile | PS51504 | 20.991 | 119 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 1.52E-14 | 121 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.6E-14 | 123 | 189 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 9.4E-10 | 124 | 180 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGAPKQKWTP EEEAALKAGV LKHGTGKWRT ILMDPEFSAI LRQRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNPQTPK CDDNPKALSV VVQGNEEIVN AKPLAISSGT PRNFGSKEIL 120 ARLDNLILEA ITTLKEPSGS DRASIALYIE EKYRAPSNIR KLLVGKLKLL TAKGKLVKVK 180 HKYSIAPNPA VSEGRRNSVH LPVEGKQKDC SKSEKSKTKI LTKSVVDQEL SKIRGMTAQE 240 AAAAAAKAVA EAEAAIAEAE EAAREAEAAE AEAEAAQVFA EAAMKAFKYR TRHPLNAVLS 300 RSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G115100.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021630908.1 | 0.0 | telomere repeat-binding factor 2-like | ||||
Swissprot | Q9FJW5 | 7e-86 | TRB2_ARATH; Telomere repeat-binding factor 2 | ||||
TrEMBL | A0A251JPG7 | 0.0 | A0A251JPG7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_013116m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67580.2 | 1e-71 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G115100.5.p |
Publications ? help Back to Top | |||
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