PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G110600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 27106.9 Da PI: 8.3323 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.4 | 1.7e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Manes.12G110600.1.p 2 SCNGCRVLRKGCSETCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Manes.12G110600.1.p 92 HVCQAAVETVLR 103 ******998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.882 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLTAGGSP 120 SLASDEVSEA EVACTDMWKL QDPNPNPHSR FSNSRSRTSP KRKRTDEPVN IIKQEKLQLQ 180 FPPSDLDLRL TPIFSPKSSP RKPEIRRPGT PSMNSEESVT TTTTCFESGL GDQYGNGGER 240 KLLNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G110600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629304.1 | 0.0 | LOB domain-containing protein 37-like isoform X1 | ||||
Swissprot | Q9FN11 | 5e-93 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2C9UVP8 | 0.0 | A0A2C9UVP8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_014772m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 2e-94 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G110600.1.p |
Publications ? help Back to Top | |||
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