PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G106400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | AP2 | ||||||||
Protein Properties | Length: 511aa MW: 56821.2 Da PI: 7.4355 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 156 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Manes.12G106400.1.p 156 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 205 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.8 | 6.5e-14 | 248 | 298 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Manes.12G106400.1.p 248 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 298 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 156 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-15 | 156 | 214 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.4E-30 | 157 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.794 | 157 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-17 | 157 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-10 | 157 | 212 | No hit | No description |
Pfam | PF00847 | 1.4E-9 | 248 | 298 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.95E-17 | 248 | 308 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.37E-25 | 248 | 308 | No hit | No description |
SMART | SM00380 | 4.2E-31 | 249 | 312 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 249 | 306 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 249 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 250 | 261 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 288 | 308 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MWDLNDSPDQ TRDDESEGCS SQKTSLDGED EKGKRVGSMS NSSSSAVVIE DGSDEEDGSG 60 ERGRIKKRSG KIFGFSVTRD NSSMESDPLV TRQFFPVEDQ EMGATSGGGG GVGAGFPRAH 120 WVGVKFCQSE SLASPKSAEV SQPLKKSRRG PRSRSSQYRG VTYYRRTGRW ESHIWDCGKQ 180 VYLGGFDTAH AAARAYDRAA IKFRGVEADI NFSIEDYEDD LKQMSNLTKE EFVHVLRRQS 240 TGFPRGSSKY RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEIEAARAYD KAAIKCNGKE 300 AVTNFDPSIY ENELNSSESS GNAADHNLDL SLGNSGSKQN SVGFSNDRQN AGMDQQSAPM 360 AFEADWRNRG IRPKLNLSRS DDSDDHRREG YCETETMQLL SQTHIQSPGN EGQRYGQFKR 420 PGENQMFHGF SPNYQMQFPS SSNGGRIGSD LSLSPSDYHH HHQQRQWQSR PPPPHQLVAN 480 AAASSGFPQQ IRTPQNWLQK NGFHSILRPS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G106400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021631444.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Swissprot | P47927 | 1e-141 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A2C9UVB7 | 0.0 | A0A2C9UVB7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_005852m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-111 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G106400.1.p |