PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G093900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family G2-like
Protein Properties Length: 360aa    MW: 40344.4 Da    PI: 6.2787
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G093900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.14e-33235290156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Manes.12G093900.1.p 235 KQRRCWSPELHRRFVDALQQLGGSKVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 290
                          79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.555232292IPR017930Myb domain
SuperFamilySSF466898.96E-19233293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.9E-30234293IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-27235290IPR006447Myb domain, plants
PfamPF002494.2E-8237288IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELSLDLGSV YVPKTITEYL REVSKVKDSS QKLSKLDDYV KKLEDEMRKI DAFKRELPLC  60
MLLLNDAIVR LKEEAMQCKK LEDRAEIEVD VSVKEDYSGA DGGNDMRDKK NWMSSVQLWN  120
TGDVNSDSKQ HDSKSETKQR SEEEDDRSTC ENPVQLCNYR SKGGAFMAFK ALPVFDGTGR  180
KEEKEVVSQV TGLSLMTPVS EFGSGNLMSK SNGNIQMKIQ NKPLQQQQQQ PSYKKQRRCW  240
SPELHRRFVD ALQQLGGSKV ATPKQIRELM QVDGLTNDEV KSHLQKYRLH IRKLPASSAA  300
QANGLWMVQD QCKDPSKPTI SQSNSPQGPF HGCGSLKDVS STGGDSIEAE DDDVSESHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14235288154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14235288154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14235288154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14235288154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-14235288255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G093900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629713.10.0transcription factor HHO5-like
TrEMBLA0A2C9UW840.0A0A2C9UW84_MANES; Uncharacterized protein
STRINGcassava4.1_010485m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-73G2-like family protein