PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G093700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 301aa MW: 33364.4 Da PI: 6.4377

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G093700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137	6.7e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l++ +reda++sl+yeAear++dPvyG+vg+i+ lq++l++l Manes.12G093700.1.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNTAQREDAVNSLAYEAEARLHDPVYGCVGLISILQHRLKEL 96 7*************************************************************************************** PP DUF260 91 kaelallkee 100 +++l +k+e Manes.12G093700.1.p 97 QSDLYNAKKE 106 *9998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.653	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.7E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSTPNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVAK LLNELNTAQR 60 EDAVNSLAYE AEARLHDPVY GCVGLISILQ HRLKELQSDL YNAKKELSQY IGPQAMLPTL 120 QSPAYMPHQH LSNPNASSMM QHGALPIMGI PCRPTNGGQL VMREPSQQQH QNQIFEAQQL 180 AAALAAREQQ DMFRAYEQQQ EIVRLNRGFD AVDSGTTTGF NQITVAAMSP SLALGSFDTP 240 YQVQQQQVDH PQHHQLEAQL FLLPQESQPQ PHEQQQHSQQ TQQQHQPSGS DEGGSIGLSC 300 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	5	119	9	124	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	5	119	9	124	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G093700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021630090.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_021630091.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-84	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A2C9UWZ1	0.0	A0A2C9UWZ1_MANES; Uncharacterized protein
STRING	cassava4.1_029920m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-83	ASYMMETRIC LEAVES 2-like 1

Link Out ? help Back to Top
Phytozome	Manes.12G093700.1.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]