PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G089800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | G2-like | ||||||||
Protein Properties | Length: 420aa MW: 46511.6 Da PI: 6.345 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 153 | 207 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G ekA+P++ilelm++++Lt+++++SHLQkYR++ Manes.12G089800.1.p 153 KMKVDWTPELHRRFVQAVEQL-GVEKAVPSRILELMGIDCLTRHNIASHLQKYRSH 207 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.766 | 150 | 209 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.38E-18 | 151 | 210 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-26 | 151 | 210 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-26 | 153 | 207 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.8E-8 | 156 | 205 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MLVVSPLANT AAAKDESQEQ VENSLSNGDN EEFPKLLEII DFGEDFFVGF SDGDVLPDLE 60 MDPEILAEFS VSDGGEEAEM NTWVSNEKME DNPRKDEDDK VSGSGSGLDS SLSTRGEEIA 120 SKEDESLVVN PFSKVSDERR KSTKAKNNQG KRKMKVDWTP ELHRRFVQAV EQLGVEKAVP 180 SRILELMGID CLTRHNIASH LQKYRSHRKH LQKREAETAT WSHRRQMYGA AAGGGSSEGD 240 IIPWQAPTMG FPPITPLHHH LHHFRPLHVW GHPPMHMWPK YLAHSLSPPP PTCPPPPRPP 300 DPSYWHHHNQ QQVPNGLTPG TPCFPQPLPA ARFATPPVPG IPSHAMYKAD PAMRVPTTQL 360 GPHPLLEFYP SKESLDAAIG DVLAKPWLPL PLGLKPPSID SVLTELQRQG VAKIPPTRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-16 | 150 | 205 | 2 | 57 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that functions with GLK2 to promote chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. Acts in a cell-autonomous manner to coordinate and maintain the photosynthetic apparatus within individual cells. May function in photosynthetic capacity optimization by integrating responses to variable environmental and endogenous cues (PubMed:11828027, PubMed:12220263, PubMed:17533111, PubMed:18643989, PubMed:19376934, PubMed:19383092, PubMed:19726569). Prevents premature senescence (PubMed:23459204). {ECO:0000269|PubMed:11828027, ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:17533111, ECO:0000269|PubMed:18643989, ECO:0000269|PubMed:19376934, ECO:0000269|PubMed:19383092, ECO:0000269|PubMed:19726569, ECO:0000269|PubMed:23459204}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G089800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Repressed by BZR2. {ECO:0000269|PubMed:12220263, ECO:0000269|PubMed:21214652}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629530.1 | 0.0 | probable transcription factor GLK1 | ||||
Swissprot | Q9SIV3 | 4e-85 | GLK1_ARATH; Transcription activator GLK1 | ||||
TrEMBL | A0A2C9UUX9 | 0.0 | A0A2C9UUX9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026662m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-73 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G089800.1.p |