PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.12G089200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 405aa MW: 45106.6 Da PI: 7.9704 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.3 | 1.3e-08 | 149 | 169 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f+r G C++Gd+C FaHg Manes.12G089200.1.p 149 VCSEFRR-GGCSRGDSCEFAHG 169 7******.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 2.5E-5 | 144 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-6 | 145 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.483 | 145 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-6 | 149 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.456 | 179 | 203 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9 | 179 | 202 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 405 aa Download sequence Send to blast |
MSTICADQHK LYPSHQLFSS SSSSSSSYYK KPFKDLEIPP RKLLLTKKAF QDSPDNIMSP 60 YYEPNLHNFL HYNDPIDCDH GHVHDHHSRG KVADEDMDPY SSDNFRMYEF KIRRCTRCRS 120 HDWTDCPFAH PGEKARRRDP RKYHYSGTVC SEFRRGGCSR GDSCEFAHGV FECWLHPSRY 180 RTEACKDGKN CKRKICFFAH SPRQLRILPE ASCVGGKYDE SLVTCSLNHG HCCCLACHSV 240 ISSPTSTLLG ISQMSPPVSP SLSPPLSPMK QRSISGLSQN SRFGDRLSNL RSGIVSYKDV 300 LAELMTSLDA MNLNNDAAAA ASSLISFSAA NNRNMNIPCI GEDHHQQLIL SPSTTEPRGG 360 SRNSFNGNYS SKGSIDEKIK NDGKNGGPGP DPDLDLGWVN ELLM* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.12G089200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629598.1 | 0.0 | zinc finger CCCH domain-containing protein 2-like | ||||
TrEMBL | A0A2C9UWC4 | 0.0 | A0A2C9UWC4_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_033478m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G03790.1 | 3e-78 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.12G089200.1.p |