PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G085900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 247aa    MW: 28426.5 Da    PI: 6.2607
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G085900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd++l d+++++G  +W+  +++ g+ R++k+c++rw +yl
  Manes.12G085900.1.p 14 KGSWNKEEDDKLRDYIQKYGHWNWRELPKYAGLSRCGKSCRLRWVNYL 61
                         799*****************99************************97 PP
2Myb_DNA-binding605.3e-1968112248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g++++eEd+l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Manes.12G085900.1.p  68 GNFSKEEDDLIIQLHQELGNK-WSRIATKLP-GRTDNDIKNHWHTHL 112
                          89*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.819961IPR017930Myb domain
SuperFamilySSF466897.26E-3111108IPR009057Homeodomain-like
SMARTSM007171.9E-121363IPR001005SANT/Myb domain
PfamPF002491.2E-131461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-221568IPR009057Homeodomain-like
CDDcd001679.52E-101661No hitNo description
PROSITE profilePS5129427.61562116IPR017930Myb domain
SMARTSM007177.3E-1866114IPR001005SANT/Myb domain
PfamPF002491.8E-1768112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2769115IPR009057Homeodomain-like
CDDcd001675.72E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVRTTAVDKN GLKKGSWNKE EDDKLRDYIQ KYGHWNWREL PKYAGLSRCG KSCRLRWVNY  60
LRPGVKHGNF SKEEDDLIIQ LHQELGNKWS RIATKLPGRT DNDIKNHWHT HLKKRGKQSR  120
ASKAEVEAQS TETPESLTSP SKKLEAADQS DVVNKTPSLP TILESFPLSK ESSYRSSASA  180
GLNFFAEDSL TSMEIFGESG EDFWTRPFVA DNAYDQDDYI SSYTLYYDDN LDFFYQVLQE  240
LPDNYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKRGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G085900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631439.10.0transcription factor MYB30-like
TrEMBLA0A2C9UV000.0A0A2C9UV00_MANES; Uncharacterized protein
STRINGcassava4.1_023393m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-55myb domain protein 9